rmuC:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

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Standard name

RmuC

Synonyms

predicted recombination limiting protein[1], RmuC[2][1], YigN[2][1], B3832[2][1] , dinK, ECK3826, JW3809, sosB, yigN, b3832

Product description

conserved protein[2]; putative alpha-helix chain[3]

DNA recombination protein; mutants have elevated recombination at microhomologies[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0006310

DNA recombination

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0233

P

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MDFSIMVYAV IALVGVAIGW LFASYQHAQQ KAEQLAEREE MVAELSAAKQ QITQSEHWRA
ECELLNNEVR SLQSINTSLE ADLREVTTRM EAAQQHADDK IRQMINSEQR LSEQFENLAN
RIFEHSNRRV DEQNRQSLNS LLSPLREQLD GFRRQVQDSF GKEAQERHTL THEIRNLQQL
NAQMAQEAIN LTRALKGDNK TQGNWGEVVL TRVLEASGLR EGYEYETQVS IENDARSRMQ
PDVIVRLPQG KDVVIDAKMT LVAYERYFNA EDDYTRESAL QEHIASVRNH IRLLGRKDYQ
QLPGLRTLDY VLMFIPVEPA FLLALDRQPE LITEALKNNI MLVSPTTLLV ALRTIANLWR
YEHQSRNAQQ IADRASKLYD KMRLFIDDMS AIGQSLDKAQ DNYRQAMKKL SSGRGNVLAQ
AEAFRGLGVE IKREINPDLA EQAVSQDEEY RLRSVPEQPN DEAYQRDDEY NQQSR
Length

475

Mol. Wt

54.764 kDa

pI

5.2 (calculated)

Extinction coefficient

44,350 - 44,475 (calc based on 15 Y, 4 W, and 1 C residues)

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Domains/Motifs/Modification Sites

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Type Residues Description Notes References

Domain

135..438

PF02646 RmuC family

PMID:19920124[5]

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Structure
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Structures

<beststructure> gene=rmuC taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16131681

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948966

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012531

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0AG71

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11472

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11472

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948966

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001434

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1440

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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