rimM:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

RimM

Synonyms

16S rRNA processing protein[1], B2608[2][1], YfjA[2][1], RimM[2][1], 21K[2][1] , ECK2605, JW5413, yfjA, b2608

Product description

ribosome maturation protein[2][3]

Factor required for 16S RNA processing; 30S maturation; binds S19[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0005737

cytoplasm

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00014

C

Seeded from EcoCyc (v14.0)

complete

GO:0030490

maturation of SSU-rRNA

PMID:9422595[5]

IMP: Inferred from Mutant Phenotype

P

16S RNA precursors accumulate in a strain with ∆rimM mutation (Figure 8 and Table 3).

complete

GO:0005737

cytoplasm

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0963

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0086

C

Seeded from EcoCyc (v14.0)

complete

GO:0005840

ribosome

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011961

C

Seeded from EcoCyc (v14.0)

complete

GO:0042274

ribosomal small subunit biogenesis

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00014

P

Seeded from EcoCyc (v14.0)

complete

GO:0043022

ribosome binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011961

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MVMMSKQLTA QAPVDPIVLG KMGSSYGIRG WLRVFSSTED AESIFDYQPW FIQKAGQWQQ
VQLESWKHHN QDMIIKLKGV DDRDAANLLT NCEIVVDSSQ LPQLEEGDYY WKDLMGCQVV
TTEGYDLGKV VDMMETGSND VLVIKANLKD AFGIKERLVP FLDGQVIKKV DLTTRSIEVD
WDPGF
Length

185

Mol. Wt

20.966 kDa

pI

4.5 (calculated)

Extinction coefficient

40,450 - 40,700 (calc based on 5 Y, 6 W, and 2 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

15..97

PF01782 RimM N-terminal domain

PMID:19920124[6]

Domain

103..182

PF05239 PRC-barrel domain

PMID:19920124[6]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=rimM taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:90111466

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947101

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0008579

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0A7X6

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11153

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11153

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947101

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001136

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1142

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Bylund, GO et al. (1998) RimM and RbfA are essential for efficient processing of 16S rRNA in Escherichia coli. J. Bacteriol. 180 73-82 PubMed
  6. ↑ 6.0 6.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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