rimI:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

RimI

Synonyms

acetylase for 30S ribosomal subunit protein S18 [1], B4373 [2][1], RimI [2][1] , ECK4364, JW4335, b4373

Product description

EG10850- Modification of 30S ribosomal subunit protein S18; acetylation of N-terminal alanine[3]

EC number (for enzymes)

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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0006464

protein modification process

P

Seeded from Riley et al 2006 [1].

Missing: evidence, reference

GO:0005737

cytoplasm

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0963

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0086

C

Seeded from EcoCyc (v14.0)

complete

GO:0017189

N-terminal peptidyl-alanine acetylation

PMID:6991870[4]

IMP: Inferred from Mutant Phenotype

P

complete

GO:0006474

N-terminal protein amino acid acetylation

PMID:6991870[4]

IMP: Inferred from Mutant Phenotype

P

complete

GO:0008080

N-acetyltransferase activity

PMID:6991870[4]

IMP: Inferred from Mutant Phenotype

F

complete

GO:0008999

ribosomal-protein-alanine N-acetyltransferase activity

PMID:6991870[4]

IMP: Inferred from Mutant Phenotype

F

complete

GO:0006464

protein modification process

PMID:6991870[4]

IMP: Inferred from Mutant Phenotype

P

complete

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

tig

PMID:19402753[5]

MALDI(Z-score):35.541182

Protein

glpK

PMID:19402753[5]

MALDI(Z-score):19.841268

Protein

pgk

PMID:19402753[5]

MALDI(Z-score):30.718705

Protein

rfaD

PMID:19402753[5]

MALDI(Z-score):43.986553

Protein

rpoA

PMID:19402753[5]

MALDI(Z-score):23.948276

Protein

yfiD

PMID:19402753[5]

MALDI(Z-score):28.270154

Protein

phoA

PMID:19402753[5]

MALDI(Z-score):18.292817

Protein

adhE

PMID:19402753[5]

MALDI(Z-score):23.839585

Protein

clpB

PMID:19402753[5]

MALDI(Z-score):18.497373

Protein

pstS

PMID:19402753[5]

MALDI(Z-score):35.771269

Protein

fusA

PMID:19402753[5]

MALDI(Z-score):26.949439

Protein

gapA

PMID:19402753[5]

MALDI(Z-score):34.419816

Protein

tufB

PMID:19402753[5]

MALDI(Z-score):30.158596

Protein

tsf

PMID:19402753[5]

MALDI(Z-score):23.379486

Protein

lysU

PMID:19402753[5]

MALDI(Z-score):18.195740

Protein

udp

PMID:19402753[5]

MALDI(Z-score):27.588620

</protect>

Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc

MNTISSLETT DLPAAYHIEQ RAHAFPWSEK TFASNQGERY LNFQLTQNGK MAAFAITQVV
LDEATLFNIA VDPDYQRQGL GRALLEHLID ELEKRGVATL WLEVRASNAA AIALYESLGF
NEATIRRNYY PTTDGREDAI IMALPISM
Length

148

Mol. Wt

16.609 kDa

pI

4.7 (calculated)

Extinction coefficient

19,940 (calc based on 6 Y, 2 W, and 0 C residues)


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

45..121

PF00583 Acetyltransferase (GNAT) family

PMID:19920124[6]

<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=rimI taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

<protect>

</protect>

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16132191

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948894

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0014342

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0A944

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10850

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10850

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948894

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000841

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0843

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. 2.0 2.1 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  4. 4.0 4.1 4.2 4.3 4.4 Isono, K & Isono, S (1980) Ribosomal protein modification in Escherichia coli. II. Studies of a mutant lacking the N-terminal acetylation of protein S18. Mol. Gen. Genet. 177 645-51 PubMed
  5. 5.00 5.01 5.02 5.03 5.04 5.05 5.06 5.07 5.08 5.09 5.10 5.11 5.12 5.13 5.14 5.15 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  6. Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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