rimI:Gene Product(s)
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Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
Standard name |
RimI |
---|---|
Synonyms |
acetylase for 30S ribosomal subunit protein S18 [1], B4373 [2][1], RimI [2][1] , ECK4364, JW4335, b4373 |
Product description |
EG10850- Modification of 30S ribosomal subunit protein S18; acetylation of N-terminal alanine[3] |
EC number (for enzymes) | |
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Notes
Function
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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
---|---|---|---|---|---|---|---|---|
GO:0006464 |
protein modification process |
P |
Seeded from Riley et al 2006 [1]. |
Missing: evidence, reference | ||||
GO:0005737 |
cytoplasm |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
C |
Seeded from EcoCyc (v14.0) |
complete | ||
GO:0005737 |
cytoplasm |
IEA: Inferred from Electronic Annotation |
SP_SL:SL-0086 |
C |
Seeded from EcoCyc (v14.0) |
complete | ||
GO:0017189 |
N-terminal peptidyl-alanine acetylation |
IMP: Inferred from Mutant Phenotype |
P |
complete | ||||
GO:0006474 |
N-terminal protein amino acid acetylation |
IMP: Inferred from Mutant Phenotype |
P |
complete | ||||
GO:0008080 |
N-acetyltransferase activity |
IMP: Inferred from Mutant Phenotype |
F |
complete | ||||
GO:0008999 |
ribosomal-protein-alanine N-acetyltransferase activity |
IMP: Inferred from Mutant Phenotype |
F |
complete | ||||
GO:0006464 |
protein modification process |
IMP: Inferred from Mutant Phenotype |
P |
complete | ||||
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
Partner Type | Partner | Notes | References | Evidence |
---|---|---|---|---|
Protein |
tig |
MALDI(Z-score):35.541182 | ||
Protein |
glpK |
MALDI(Z-score):19.841268 | ||
Protein |
pgk |
MALDI(Z-score):30.718705 | ||
Protein |
rfaD |
MALDI(Z-score):43.986553 | ||
Protein |
rpoA |
MALDI(Z-score):23.948276 | ||
Protein |
yfiD |
MALDI(Z-score):28.270154 | ||
Protein |
phoA |
MALDI(Z-score):18.292817 | ||
Protein |
adhE |
MALDI(Z-score):23.839585 | ||
Protein |
clpB |
MALDI(Z-score):18.497373 | ||
Protein |
pstS |
MALDI(Z-score):35.771269 | ||
Protein |
fusA |
MALDI(Z-score):26.949439 | ||
Protein |
gapA |
MALDI(Z-score):34.419816 | ||
Protein |
tufB |
MALDI(Z-score):30.158596 | ||
Protein |
tsf |
MALDI(Z-score):23.379486 | ||
Protein |
lysU |
MALDI(Z-score):18.195740 | ||
Protein |
udp |
MALDI(Z-score):27.588620 | ||
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Notes
Localization
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
Compartment | Description | Evidence | Reference/Source | Notes |
---|---|---|---|---|
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Notes
Structure and Physical Properties
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Physical Properties
See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
Name | |
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Sequence |
MNTISSLETT DLPAAYHIEQ RAHAFPWSEK TFASNQGERY LNFQLTQNGK MAAFAITQVV LDEATLFNIA VDPDYQRQGL GRALLEHLID ELEKRGVATL WLEVRASNAA AIALYESLGF NEATIRRNYY PTTDGREDAI IMALPISM |
Length |
148 |
Mol. Wt |
16.609 kDa |
pI |
4.7 (calculated) |
Extinction coefficient |
19,940 (calc based on 6 Y, 2 W, and 0 C residues) |
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Domains/Motifs/Modification Sites
See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
|
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Structure
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Structure figures<protect> | ||||||
Notes
Gene Product Resources
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
Resource type | Source | Notes/Reference |
---|---|---|
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Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
Database | Accession | Notes |
---|---|---|
Escherichia coli str. K-12 substr. MG1655 | ||
Escherichia coli str. K-12 substr. MG1655 | ||
Escherichia coli str. K-12 substr. MG1655 | ||
Escherichia coli str. K-12 substr. MG1655 | ||
Escherichia coli str. K-12 substr. MG1655 | ||
Escherichia coli str. K-12 substr. MG1655 | ||
Escherichia coli str. K-12 substr. MG1655 | ||
Escherichia coli str. K-12 substr. MG1655 | ||
Escherichia coli str. K-12 substr. MG1655 | ||
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Notes
Links
Name | URL | Comments |
---|---|---|
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ 4.0 4.1 4.2 4.3 4.4 Isono, K & Isono, S (1980) Ribosomal protein modification in Escherichia coli. II. Studies of a mutant lacking the N-terminal acetylation of protein S18. Mol. Gen. Genet. 177 645-51 PubMed
- ↑ 5.00 5.01 5.02 5.03 5.04 5.05 5.06 5.07 5.08 5.09 5.10 5.11 5.12 5.13 5.14 5.15 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
- ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed
Categories
- GO:0006464 ! cellular protein modification process
- GO:0005737 ! cytoplasm
- GO:0017189 ! N-terminal peptidyl-alanine acetylation
- GO:0006474 ! N-terminal protein amino acid acetylation
- GO:0008080 ! N-acetyltransferase activity
- GO:0008999 ! ribosomal-protein-alanine N-acetyltransferase activity
- Proteins
- RefGenome Annotated Gene