rhsD:Gene Product(s)
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
| Standard name |
RhsD |
|---|---|
| Synonyms |
rhsD element protein[1], B0497[2][1], RhsD[2][1] , ECK0491, JW0486, b0497 |
| Product description |
RhsD protein in rhs element[2][3] Function unknown, encoded within RhsD repeat; hotspot for chromosomal duplication formation[4] |
| EC number (for enzymes) |
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| edit table |
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Notes
Function
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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| edit table |
Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
|
Protein |
groL |
Experiment(s):EBI-1136906 | ||
|
Protein |
rrmJ |
Experiment(s):EBI-1136906 | ||
|
Protein |
tatE |
Experiment(s):EBI-1136906 | ||
|
Protein |
rhsC |
Experiment(s):EBI-1136906 | ||
|
Protein |
rhsA |
Experiment(s):EBI-1136906 | ||
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Notes
Localization
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
| Compartment | Description | Evidence | Reference/Source | Notes |
|---|---|---|---|---|
| edit table |
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Notes
Structure and Physical Properties
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Physical Properties
See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Name | |
|---|---|
| Sequence |
MSGKPAARQG DMTQYGGPIV QGSAGVRIGA PTGVACSVCP GGMTSGNPVN PLLGAKVLPG ETDLALPGPL PFILSRTYSS YRTKTPAPVG VFGPGWKAPS DIRLQLRDDG LILNDNGGRS IHFEPLLPGE AVYSRSESMW LVRGGKAAQP DGHTLARLWG ALPPDIRLSP HLYLATNSAQ GPWWILGWSE RVPGAEDVLP APLPPYRVLT GMADRFGRTL TYRREAAGDL AGEITGVTDG AGREFRLVLT TQAQRAEEAR TSSLSSSDSS RPLSASAFPD TLPGTEYGPD RGIRLSAVWL MHDPAYPESL PAAPLVRYTY TEAGELLAVY DRSNTQVRAF TYDAQHPGRM VAHRYAGRPE MRYRYDDTGR VVEQLNPAGL SYRYLYEQDR ITVTDSLNRR EVLHTEGGAG LKRVVKKELA DGSVTRSGYD AAGRLTAQTD AAGRRTEYGL NVVSGDITDI TTPDGRETKF YYNDGNQLTA VVSPDGLESR REYDEPGRLV SETSRSGETV RYRYDDAHSE LPATTTDATG STRQMTWSRY GQLLAFTDCS GYQTRYEYDR FGQMTAVHRE EGISLYRRYD NRGRLTSVKD AQGRETRYEY NAAGDLTAVI TPDGNRSETQ YDAWGKAVST TQGGLTRSME YDAAGRVISL TNENGSHSVF SYDALDRLVQ QGGFDGRTQR YHYDLTGKLT QSEDEGLVIL WYYDESDRIT HRTVNGEPAE QWQYDGHGWL TDISHLSEGH RVAVHYGYDD KGRLTGECQT VENPETGELL WQHETKHAYN EQGLANRVTP DSLPPVEWLT YGSGYLAGMK LGGTPLVEYT RDRLHRETVR SFGSMAGSNA AYELTSTYTP AGQLQSQHLN SLVYDRDYGW SDNGDLVRIS GPRQTREYGY SATGRLESVR TLAPDLDIRI PYATDPAGNR LPDPELHPDS TLTVWPDNRI AEDAHYVYRH DEYGRLTEKT DRIPAGVIRT DDERTHHYHY DSQHRLVFYT RIQHGEPLVE SRYLYDPLGR RMAKRVWRRE RDLTGWMSLS RKPEVTWYGW DGDRLTTVQT DTTRIQTVYE PGSFTPLIRV ETENGEREKA QRRSLAETLQ QEGSENGHGV VFPAELVRLL DRLEEEIRAD RVSSESRAWL AQCGLTVEQL ARQVEPEYTP ARKAHLYHCD HRGLPLALIS EDGNTAWSAE YDEWGNQLNE ENPHHVYQPY RLPGQQHDEE SGLYYNRHRY YDPLQGRYIT QDPMGLKGGW NLYQYPLNPL QQIDPMGLLQ TWDDARSGAC TGGVCGVLSR IIGPSKFDST ADAALDALKE TQNRSLCNDM EYSGIVCKDT NGKYFASKAE TDNLRKESYP LKRKCPTGTD RVAAYHTHGA DSHGDYVDEF FSSSDKNLVR SKDNNLEAFY LATPDGRFEA LNNKGEYIFI RNSVPGLSSV CIPYHD |
| Length |
1,426 |
| Mol. Wt |
159.726 kDa |
| pI |
5.8 (calculated) |
| Extinction coefficient |
264,150 - 265,650 (calc based on 85 Y, 25 W, and 12 C residues) |
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Domains/Motifs/Modification Sites
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See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
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<motif_map/> |
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Structure
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Structure figures<protect> | ||||||
Notes
Gene Product Resources
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
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Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
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Notes
Links
| Name | URL | Comments |
|---|---|---|
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ 5.0 5.1 5.2 5.3 5.4 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
- ↑ 6.0 6.1 6.2 6.3 6.4 6.5 6.6 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed
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