rhlE:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

RhlE

Synonyms

RNA helicase[1], B0797[2][1], RhlE[2][1] , ECK0786, JW0781, b0797

Product description

DEAD-box-containing ATP-dependent RNA helicase family member[2][3]

DEAD-box protein family; ATP-dependent RNA helicase-like protein[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0000166

nucleotide binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0547

F

Seeded from EcoCyc (v14.0)

complete

GO:0003676

nucleic acid binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000629

F

Seeded from EcoCyc (v14.0)

complete

GO:0003676

nucleic acid binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001650

F

Seeded from EcoCyc (v14.0)

complete

GO:0003676

nucleic acid binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011545

F

Seeded from EcoCyc (v14.0)

complete

GO:0003723

RNA binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0694

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000629

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001650

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011545

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0067

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

rpsG

PMID:16606699[5]

Experiment(s):EBI-1138014

Protein

yciH

PMID:16606699[5]

Experiment(s):EBI-1138014

Protein

rpsI

PMID:16606699[5]

Experiment(s):EBI-1138014

Protein

rpmB

PMID:16606699[5]

Experiment(s):EBI-1138014

Protein

rplB

PMID:16606699[5]

Experiment(s):EBI-1138014

Protein

rplC

PMID:16606699[5]

Experiment(s):EBI-1138014

Protein

pdxH

PMID:16606699[5]

Experiment(s):EBI-1138014

Protein

rpsR

PMID:16606699[5]

Experiment(s):EBI-1138014

Protein

rpoC

PMID:16606699[5]

Experiment(s):EBI-1138014

Protein

yraI

PMID:16606699[5]

Experiment(s):EBI-1138014

Protein

emrA

PMID:16606699[5]

Experiment(s):EBI-1138014

Protein

rpsD

PMID:16606699[5]

Experiment(s):EBI-1138014

Protein

nadE

PMID:16606699[5]

Experiment(s):EBI-1138014

Protein

ygaE

PMID:16606699[5]

Experiment(s):EBI-1138014

Protein

rplA

PMID:16606699[5]

Experiment(s):EBI-1138014

Protein

rplD

PMID:16606699[5]

Experiment(s):EBI-1138014

Protein

ycgL

PMID:16606699[5]

Experiment(s):EBI-1138014

Protein

yafO

PMID:16606699[5]

Experiment(s):EBI-1138014

Protein

rpoB

PMID:16606699[5]

Experiment(s):EBI-1138014

Protein

rpsJ

PMID:16606699[5]

Experiment(s):EBI-1138014

Protein

rpsA

PMID:16606699[5]

Experiment(s):EBI-1138014

Protein

nfnB

PMID:16606699[5]

Experiment(s):EBI-1138014
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MSFDSLGLSP DILRAVAEQG YREPTPIQQQ AIPAVLEGRD LMASAQTGTG KTAGFTLPLL
QHLITRQPHA KGRRPVRALI LTPTRELAAQ IGENVRDYSK YLNIRSLVVF GGVSINPQMM
KLRGGVDVLV ATPGRLLDLE HQNAVKLDQV EILVLDEADR MLDMGFIHDI RRVLTKLPAK
RQNLLFSATF SDDIKALAEK LLHNPLEIEV ARRNTASDQV TQHVHFVDKK RKRELLSHMI
GKGNWQQVLV FTRTKHGANH LAEQLNKDGI RSAAIHGNKS QGARTRALAD FKSGDIRVLV
ATDIAARGLD IEELPHVVNY ELPNVPEDYV HRIGRTGRAA ATGEALSLVC VDEHKLLRDI
EKLLKKEIPR IAIPGYEPDP SIKAEPIQNG RQQRGGGGRG QGGGRGQQQP RRGEGGAKSA
SAKPAEKPSR RLGDAKPAGE QQRRRRPRKP AAAQ
Length

454

Mol. Wt

49.99 kDa

pI

10.5 (calculated)

Extinction coefficient

14,440 - 14,565 (calc based on 6 Y, 1 W, and 1 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

25..197

PF00270 DEAD/DEAH box helicase

PMID:19920124[6]

Domain

263..340

PF00271 Helicase conserved C-terminal domain

PMID:19920124[6]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=rhlE taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16128765

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945425

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0002719

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P25888

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11235

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11235

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945425

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001213

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1217

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.00 5.01 5.02 5.03 5.04 5.05 5.06 5.07 5.08 5.09 5.10 5.11 5.12 5.13 5.14 5.15 5.16 5.17 5.18 5.19 5.20 5.21 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ 6.0 6.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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