rcsA:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

RcsA

Synonyms

DNA-binding transcriptional activator, co-regulator with RcsB[1], B1951[2][1], CpsR[2][1], RcsA[2][1], positive regulator of capsular polysaccharide synthesis[2][1] , cpsR, ECK1949, JW1935, b1951

Product description

positive DNA-binding transcriptional regulator of capsular polysaccharide synthesis, activates its own expression[2][3];

Component of RcsAB transcriptional dual regulator[2][3]

Positive regulatory gene for capsule (colanic acid) synthesis; two regulatory proteins are derived from the same gene[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0000156

two-component response regulator activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016032

F

Seeded from EcoCyc (v14.0)

complete

GO:0000160

two-component signal transduction system (phosphorelay)

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016032

P

Seeded from EcoCyc (v14.0)

complete

GO:0003677

DNA binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016032

F

Seeded from EcoCyc (v14.0)

complete

GO:0003677

DNA binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0238

F

Seeded from EcoCyc (v14.0)

complete

GO:0003700

transcription factor activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000792

F

Seeded from EcoCyc (v14.0)

complete

GO:0005622

intracellular

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000792

C

Seeded from EcoCyc (v14.0)

complete

GO:0005622

intracellular

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016032

C

Seeded from EcoCyc (v14.0)

complete

GO:0006350

transcription

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0804

P

Seeded from EcoCyc (v14.0)

complete

GO:0006355

regulation of transcription, DNA-dependent

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000792

P

Seeded from EcoCyc (v14.0)

complete

GO:0006355

regulation of transcription, DNA-dependent

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016032

P

Seeded from EcoCyc (v14.0)

complete

GO:0043565

sequence-specific DNA binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000792

F

Seeded from EcoCyc (v14.0)

complete

GO:0050896

response to stimulus

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0716

P

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of RcsAB transcriptional dual regulator

could be indirect

Protein

add

PMID:15690043[5]

Experiment(s):EBI-882652

Protein

cadA

PMID:15690043[5]

Experiment(s):EBI-882652

Protein

dnaK

PMID:15690043[5]

Experiment(s):EBI-882652

Protein

hupA

PMID:15690043[5]

Experiment(s):EBI-882652

Protein

hycC

PMID:15690043[5]

Experiment(s):EBI-882652

Protein

rplB

PMID:15690043[5]

Experiment(s):EBI-882652

Protein

rplC

PMID:15690043[5]

Experiment(s):EBI-882652

Protein

rplD

PMID:15690043[5]

Experiment(s):EBI-882652

Protein

rplE

PMID:15690043[5]

Experiment(s):EBI-882652

Protein

rplM

PMID:15690043[5]

Experiment(s):EBI-882652

Protein

rplP

PMID:15690043[5]

Experiment(s):EBI-882652

Protein

rplS

PMID:15690043[5]

Experiment(s):EBI-882652

Protein

rplT

PMID:15690043[5]

Experiment(s):EBI-882652

Protein

rplU

PMID:15690043[5]

Experiment(s):EBI-882652

Protein

rplV

PMID:15690043[5]

Experiment(s):EBI-882652

Protein

rplW

PMID:15690043[5]

Experiment(s):EBI-882652

Protein

rpmC

PMID:15690043[5]

Experiment(s):EBI-882652

Protein

rpsB

PMID:15690043[5]

Experiment(s):EBI-882652

Protein

rpsF

PMID:15690043[5]

Experiment(s):EBI-882652

Protein

rpsG

PMID:15690043[5]

Experiment(s):EBI-882652

Protein

rpsM

PMID:15690043[5]

Experiment(s):EBI-882652

Protein

rpsN

PMID:15690043[5]

Experiment(s):EBI-882652

Protein

rpmG

PMID:15690043[5]

Experiment(s):EBI-882652

Protein

rhsC

PMID:16606699[6]

Experiment(s):EBI-1141484

Protein

groL

PMID:16606699[6]

Experiment(s):EBI-1141484

Protein

pgi

PMID:16606699[6]

Experiment(s):EBI-1141484

Protein

rhsA

PMID:16606699[6]

Experiment(s):EBI-1141484

Protein

add

PMID:19402753[7]

LCMS(ID Probability):99.0

Protein

cadA

PMID:19402753[7]

LCMS(ID Probability):99.0

Protein

hycC

PMID:19402753[7]

LCMS(ID Probability):99.0

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MSTIIMDLCS YTRLGLTGYL LSRGVKKREI NDIETVDDLA IACDSQRPSV VFINEDCFIH
DASNSQRIKL IINQHPNTLF IVFMAIANVH FDEYLLVRKN LLISSKSIKP ESLDDILGDI
LKKETTITSF LNMPTLSLSR TESSMLRMWM AGQGTIQISD QMNIKAKTVS SHKGNIKRKI
KTHNKQVIYH VVRLTDNVTN GIFVNMR
Length

207

Mol. Wt

23.517 kDa

pI

9.6 (calculated)

Extinction coefficient

11,460 - 11,835 (calc based on 4 Y, 1 W, and 3 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

135..192

PF00196 Bacterial regulatory proteins, luxR family

PMID:19920124[8]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=rcsA taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16129898

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946467

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0006482

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P69405

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10820

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10820

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946467

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000811

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0813

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.00 5.01 5.02 5.03 5.04 5.05 5.06 5.07 5.08 5.09 5.10 5.11 5.12 5.13 5.14 5.15 5.16 5.17 5.18 5.19 5.20 5.21 5.22 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
  6. ↑ 6.0 6.1 6.2 6.3 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  7. ↑ 7.0 7.1 7.2 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  8. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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