racC:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

RacC

Synonyms

Rac prophage; predicted protein[1], B1351[2][1], RacC[2][1], SbcA[2][1] , ECK1348, JW1345, sbcA, b1351

Product description

Rac prophage; predicted protein[2][3]

Function unknown, Rac prophage[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

yaiA

PMID:16606699[5]

Experiment(s):EBI-1139617

Protein

rrmA

PMID:16606699[5]

Experiment(s):EBI-1139617

Protein

hchA

PMID:16606699[5]

Experiment(s):EBI-1139617

Protein

pflB

PMID:16606699[5]

Experiment(s):EBI-1139617

Protein

tatE

PMID:16606699[5]

Experiment(s):EBI-1139617

Protein

ydfV

PMID:16606699[5]

Experiment(s):EBI-1139617

Protein

slyD

PMID:16606699[5]

Experiment(s):EBI-1139617

Protein

rplB

PMID:16606699[5]

Experiment(s):EBI-1139617

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc

MITNYEATVV TTDDIVHEVN LEGKRIGYVI KTENKETPFT VVDIDGPSGN VKTLDEGVKK
MCLVHIGKNL PAEKKAEFLA TLIAMKLKGE I
Length

91

Mol. Wt

10.015 kDa

pI

5.9 (calculated)

Extinction coefficient

2,980 - 3,105 (calc based on 2 Y, 0 W, and 1 C residues)


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=racC taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16129312

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945920

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0004533

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P15033

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10813

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10813

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945920

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000804

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0806

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. 5.0 5.1 5.2 5.3 5.4 5.5 5.6 5.7 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed

Categories

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