queC:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YbaX

Synonyms

predicted aluminum resistance protein[1], B0444[2][1], YbaX[2][1], QueC[2][1] , ECK0438, JW0434, ybaX, b0444

Product description

enzyme in preQ0 biosynthesis [2][3]

Required for 7-cyano-7-deazaguanine (preQ0) synthesis; queuosine biosynthesis, step 1[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0004055

argininosuccinate synthase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001518

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001518

F

Seeded from EcoCyc (v14.0)

complete

GO:0006526

arginine biosynthetic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001518

P

Seeded from EcoCyc (v14.0)

complete

GO:0008616

queuosine biosynthetic process

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01633

P

Seeded from EcoCyc (v14.0)

complete

GO:0008616

queuosine biosynthetic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004479

P

Seeded from EcoCyc (v14.0)

complete

GO:0008616

queuosine biosynthetic process

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0671

P

Seeded from EcoCyc (v14.0)

complete

GO:0016810

hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004479

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

tufA

PMID:15690043[5]

Experiment(s):EBI-885625, EBI-892291

Protein

aidB

PMID:15690043[5]

Experiment(s):EBI-892291

Protein

dnaK

PMID:15690043[5]

Experiment(s):EBI-892291

Protein

napD

PMID:15690043[5]

Experiment(s):EBI-892291

Protein

rplL

PMID:15690043[5]

Experiment(s):EBI-892291

Protein

rpsJ

PMID:15690043[5]

Experiment(s):EBI-892291

Protein

yegT

PMID:15690043[5]

Experiment(s):EBI-892291

Protein

grcA

PMID:15690043[5]

Experiment(s):EBI-892291

Protein

iscS

PMID:16606699[6]

Experiment(s):EBI-1136708

Protein

narZ

PMID:16606699[6]

Experiment(s):EBI-1136708

Protein

lacZ

PMID:16606699[6]

Experiment(s):EBI-1136708

Protein

spoT

PMID:16606699[6]

Experiment(s):EBI-1136708

Protein

glpD

PMID:16606699[6]

Experiment(s):EBI-1136708

Protein

mukB

PMID:16606699[6]

Experiment(s):EBI-1136708

Protein

dnaK

PMID:16606699[6]

Experiment(s):EBI-1136708

Protein

rpsJ

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

aidB

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

napD

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

tufB

PMID:19402753[7]

MALDI(Z-score):20.501587

Protein

yegT

PMID:19402753[7]

LCMS(ID Probability):99.6

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MKRAVVVFSG GQDSTTCLVQ ALQQYDEVHC VTFDYGQRHR AEIDVARELA LKLGARAHKV
LDVTLLNELA VSSLTRDSIP VPDYEPEADG IPNTFVPGRN ILFLTLAAIY AYQVKAEAVI
TGVCETDFSG YPDCRDEFVK ALNHAVSLGM AKDIRFETPL MWIDKAETWA LADYYGKLDL
VRNETLTCYN GFKGDGCGHC AACNLRANGL NHYLADKPTV MAAMKQKTGL R
Length

231

Mol. Wt

25.513 kDa

pI

6.0 (calculated)

Extinction coefficient

25,900 - 26,900 (calc based on 10 Y, 2 W, and 8 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

3..140

PF06508 ExsB

PMID:19920124[8]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=queC taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16128429

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947034

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001539

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P77756

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6245

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13252

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947034

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002856

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3041

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 5.4 5.5 5.6 5.7 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
  6. ↑ 6.0 6.1 6.2 6.3 6.4 6.5 6.6 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  7. ↑ 7.0 7.1 7.2 7.3 7.4 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  8. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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