psuK:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

PscK[1]

Synonyms

B2166[2][3], YeiC[2][3], PscK[1], ECK2159, JW2153, yeiC, b2166

Product description

pseudouridine kinase[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0050225

pseudouridine kinase activity

PMID:18591240[4]

IDA: Inferred from Direct Assay

F

Fig. 3.

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

groL

PMID:16606699[5]

Experiment(s):EBI-1142078

Protein

nadE

PMID:16606699[5]

Experiment(s):EBI-1142078

Protein

yciA

PMID:16606699[5]

Experiment(s):EBI-1142078

Protein

rpsD

PMID:16606699[5]

Experiment(s):EBI-1142078

Protein

yfdS

PMID:16606699[5]

Experiment(s):EBI-1142078

Protein

yddJ

PMID:16606699[5]

Experiment(s):EBI-1142078

Protein

narH

PMID:16606699[5]

Experiment(s):EBI-1142078

Protein

hfq

PMID:16606699[5]

Experiment(s):EBI-1142078

Protein

astE

PMID:16606699[5]

Experiment(s):EBI-1142078
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MREKDYVVII GSANIDVAGY SHESLNYADS NPGKIKFTPG GVGRNIAQNL ALLGNKAWLL
SAVGSDFYGQ SLLTQTNQSG VYVDKCLIVP GENTSSYLSL LDNTGEMLVA INDMNISNAI
TAEYLAQHGE FIQRAKVIVA DCNISEEALA WILDNAANVP VFVDPVSAWK CVKVRDRLNQ
IHTLKPNRLE AETLSGIALS GREDVAKVAA WFHQHGLNRL VLSMGGDGVY YSDISGESGW
SAPIKTNVIN VTGAGDAMMA GLASCWVDGM PFAESVRFAQ GCSSMALSCE YTNNPDLSIA
NVISLVENAE CLN
Length

313

Mol. Wt

33.572 kDa

pI

4.6 (calculated)

Extinction coefficient

47,900 - 48,775 (calc based on 10 Y, 6 W, and 7 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

4..299

PF00294 pfkB family carbohydrate kinase

PMID:19920124[6]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yeiC taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16130104

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946664

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P30235

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946664

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  2. ↑ 2.0 2.1 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  4. ↑ 4.0 4.1 Preumont, A et al. (2008) Molecular identification of pseudouridine-metabolizing enzymes. J. Biol. Chem. 283 25238-46 PubMed
  5. ↑ 5.0 5.1 5.2 5.3 5.4 5.5 5.6 5.7 5.8 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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