ppdB:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

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Standard name

PpdB

Synonyms

conserved protein[1], B2825[2][1], YgdC[2][1], PpdB[2][1] , ECK2821, JW5451, ygdC, b2825

Product description

prepilin peptidase dependent protein B[2][3]

Function unknown; regulated by FlhDC and FliA; mutants are not defective in motlity or chemotraxis; first 7 residues may be cleaved by prepilin peptidase to leave an N-terminal methylphenylalanine[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
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Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MPVKEQGFSL LEVLIAMAIS SVLLLGAARF LPALQRESLT STRKLALEDE IWLRVFTVAK
HLQRAGYCHG ICTGEGLEIV GQGDCVIVQW DANSNGIWDR EPVKESDQIG FRLKEHVLET
LRGATSCEGK GWDKVTNPDA IIIDTFQVVR QDVSGFSPVL TVNMRAASKS EPQTVVNASY
SVTGFNL
Length

187

Mol. Wt

20.518 kDa

pI

5.4 (calculated)

Extinction coefficient

24,980 - 25,480 (calc based on 2 Y, 4 W, and 4 C residues)

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Domains/Motifs/Modification Sites

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Type Residues Description Notes References

Domain

6..25

PF07963 Prokaryotic N-terminal methylation motif

PMID:19920124[5]

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Structure
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Structures

<beststructure> gene=ppdB taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16130729

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948985

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0009263

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P08371

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11156

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11156

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948985

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001139

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1145

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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