phnI:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

PhnI

Synonyms

carbon-phosphorus lyase complex subunit[1], B4099[2][1], PhnI[2][1] , ECK4092, JW4060, b4099

Product description

carbon-phosphorus lyase complex subunit[2][3]

Carbon-phosphorus lyase complex subunit[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0015716

phosphonate transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR008773

P

Seeded from EcoCyc (v14.0)

complete

GO:0015716

phosphonate transport

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0019

P

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MYVAVKGGEK AIDAAHALQE SRRRGDTDLP ELSVAQIEQQ LNLAVDRVMT EGGIADRELA
ALALKQASGD NVEAIFLLRA YRTTLAKLAV SEPLDTTGMR LERRISAVYK DIPGGQLLGP
TYDYTHRLLD FTLLANGEAP TLTTADSEQQ PSPHVFSLLA RQGLAKFEED SGAQPDDITR
TPPVYPCSRS SRLQQLMRGD EGYLLALAYS TQRGYGRNHP FAGEIRSGYI DVSIVPEELG
FAVNVGELLM TECEMVNGFI DPPGEPPHFT RGYGLVFGMS ERKAMAMALV DRALQAPEYG
EHATGPAQDE EFVLAHADNV EAAGFVSHLK LPHYVDFQAE LELLKRLQQE QNHG
Length

354

Mol. Wt

38.852 kDa

pI

4.8 (calculated)

Extinction coefficient

19,370 - 19,620 (calc based on 13 Y, 0 W, and 2 C residues)

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Domains/Motifs/Modification Sites

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Type Residues Description Notes References

Domain

1..354

PF05861 Bacterial phosphonate metabolism protein (PhnI)

PMID:19920124[5]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=phnI taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16131925

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948605

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0013428

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P16687

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10718

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10718

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948605

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000710

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0712

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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