nfrA:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

NfrA

Synonyms

bacteriophage N4 receptor, outer membrane subunit[1], B0568[2][1], NfrA[2][1] , ECK0560, JW0557, b0568

Product description

bacteriophage N4 receptor, outer membrane protein[2][3]

Outer membrane protein, putative structural receptor for N4 adsorption[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0005488

binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011990

F

Seeded from EcoCyc (v14.0)

complete

GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-1003

C

Seeded from EcoCyc (v14.0)

complete

GO:0009279

cell outer membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0998

C

Seeded from EcoCyc (v14.0)

complete

GO:0009279

cell outer membrane

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0040

C

Seeded from EcoCyc (v14.0)

complete

GO:0009597

detection of virus

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0580

P

Seeded from EcoCyc (v14.0)

complete

GO:0016020

membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0472

C

Seeded from EcoCyc (v14.0)

complete

GO:0046718

entry of virus into host cell

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0580

P

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

gltD

PMID:16606699[5]

Experiment(s):EBI-1137200

Protein

intA

PMID:16606699[5]

Experiment(s):EBI-1137200

Protein

dnaK

PMID:16606699[5]

Experiment(s):EBI-1137200

Protein

hemG

PMID:16606699[5]

Experiment(s):EBI-1137200

Protein

groL

PMID:16606699[5]

Experiment(s):EBI-1137200
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

outer membrane


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MKENNLNRVI GWSGLLLTSL LSTSALADNI GTSAEELGLS DYRHFVIYPR LDKALKAQKN
NDEATAIREF EYIHQQVPDN IPLTLYLAEA YRHFGHDDRA RLLLEDQLKR HPGDARLERS
LAAIPVEVKS VTTVEELLAQ QKACDAAPTL RCRSEVGQNA LRLAQLPVAR AQLNDATFAA
SPEGKTLRTD LLQRAIYLKQ WSQADTLYNE ARQQNTLSAA ERRQWFDVLL AGQLDDRILA
LQSQGIFTDP QSYITYATAL AYRGEKARLQ HYLIENKPLF TTDAQEKSWL YLLSKYSANP
VQALANYTVQ FADNRQYVVG ATLPVLLKEG QYDAAQKLLA TLPANEMLEE RYAVSVATRN
KAEALRLARL LYQQEPANLT RLDQLTWQLM QNEQSREAAD LLLQRYPFQG DARVSQTLMA
RLASLLESHP YLATPAKVAI LSKPLPLAEQ RQWQSQLPGI ADNCPAIVRL LGDMSPSYDA
AAWNRLAKCY RDTLPGVALY AWLQAEQRQP SAWQHRAVAY QAYQVEDYAT ALAAWQKISL
HDMSNEDLLA AANTAQAAGN GAARDRWLQQ AEKRGLGSNA LYWWLHAQRY IPGQPELALN
DLTRSINIAP SANAYVARAT IYRQRHNVPA AVSDLRAALE LEPNNSNTQA ALGYALWDSG
DIAQSREMLE PAHKGLPDDP ALIRQLAYVN QRLDDMPATQ HYARLVIDDI DNQALITPLT
PEQNQQRFNF RRLHEEVGRR WTFSFDSSIG LRSGAMSTAN NNVGGAAPGK SYRSYGQLEA
EYRIGRNMLL EGDLLSVYSR VFADTGENGV MMPVKNPMSG TGLRWKPLRD QIFFIAVEQQ
LPLNGQNGAS DTMLRASASF FNGGKYSDEW HPNGSGWFAQ NLYLDAAQYI RQDIQAWTAD
YRVSWHQKVA NGQTIEPYAH VQDNGYRDKG TQGAQLGGVG VRWNIWTGET HYDAWPHKVS
LGVEYQHTFK AINQRNGERN NAFLTIGVHW
Length

990

Mol. Wt

111.31 kDa

pI

3.5 (calculated)

Extinction coefficient

199,050 - 199,550 (calc based on 45 Y, 24 W, and 4 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

motif

1-27

UniProt Manual:Signal Peptides

UniProt:P31600


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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=nfrA taxon=12017 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16128551

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:944741

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001939

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P31600

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11740

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11740

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:944741

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001679

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1691

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 5.4 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed

Categories

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