napD:Gene Product(s)
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
| Standard name |
NapD |
|---|---|
| Synonyms |
assembly protein for periplasmic nitrate reductase[1], B2207[2][1], YojF[2][1], NapD[2][1] , ECK2199, JW2195, yojF, b2207 |
| Product description |
Twin-arginine signal-peptide-binding chaperone for NapA[4] |
| EC number (for enzymes) |
|
| edit table |
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Notes
Function
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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0005737 |
cytoplasm |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
C |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0005737 |
cytoplasm |
IEA: Inferred from Electronic Annotation |
SP_SL:SL-0086 |
C |
Seeded from EcoCyc (v14.0) |
complete | ||
| edit table |
Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
|
Protein |
pta |
Experiment(s):EBI-886362, EBI-892823 | ||
|
Protein |
aceF |
Experiment(s):EBI-892823 | ||
|
Protein |
groL |
Experiment(s):EBI-892823 | ||
|
Protein |
rplW |
Experiment(s):EBI-892823 | ||
|
Protein |
dnaK |
Experiment(s):EBI-1142158 | ||
|
Protein |
aspS |
Experiment(s):EBI-1142158 | ||
|
Protein |
yahO |
Experiment(s):EBI-1142158 | ||
|
Protein |
greB |
Experiment(s):EBI-1142158 | ||
|
Protein |
yecF |
Experiment(s):EBI-1142158 | ||
|
Protein |
nuoG |
Experiment(s):EBI-1142158 | ||
|
Protein |
htpG |
Experiment(s):EBI-1142158 | ||
|
Protein |
uvrY |
Experiment(s):EBI-1142158 | ||
|
Protein |
rplB |
Experiment(s):EBI-1142158 | ||
|
Protein |
nudI |
Experiment(s):EBI-1142158 | ||
|
Protein |
yfjM |
Experiment(s):EBI-1142158 | ||
|
Protein |
rpsB |
Experiment(s):EBI-1142158 | ||
|
Protein |
yqhH |
Experiment(s):EBI-1142158 | ||
|
Protein |
groS |
LCMS(ID Probability):99.6 | ||
|
Protein |
groL |
LCMS(ID Probability):99.6 | ||
|
Protein |
pta |
LCMS(ID Probability):99.6 MALDI(Z-score):28.433911 | ||
|
Protein |
yacL |
LCMS(ID Probability):99.6 | ||
|
Protein |
rplW |
LCMS(ID Probability):99.6 | ||
| edit table |
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Notes
Localization
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
| Compartment | Description | Evidence | Reference/Source | Notes |
|---|---|---|---|---|
|
plasma membrane |
From EcoCyc[3] |
| ||
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Notes
Structure and Physical Properties
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Physical Properties
See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Name | |
|---|---|
| Sequence |
MHTNWQVCSL VVQAKSERIS DISTQLNAFP GCEVAVSDAP SGQLIVVVEA EDSETLIQTI ESVRNVEGVL AVSLVYHQQE EQGEETP |
| Length |
87 |
| Mol. Wt |
9.467 kDa |
| pI |
4.0 (calculated) |
| Extinction coefficient |
6,990 - 7,240 (calc based on 1 Y, 1 W, and 2 C residues) |
| edit table |
Domains/Motifs/Modification Sites
|
See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
|
<motif_map/> |
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Structure
| </protect>
Structure figures<protect> | ||||||
Notes
Gene Product Resources
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
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Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
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Notes
Links
| Name | URL | Comments |
|---|---|---|
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ 5.0 5.1 5.2 5.3 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
- ↑ 6.00 6.01 6.02 6.03 6.04 6.05 6.06 6.07 6.08 6.09 6.10 6.11 6.12 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
- ↑ 7.0 7.1 7.2 7.3 7.4 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
- ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed
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