nagB:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

NagB

Synonyms

glucosamine-6-phosphate deaminase[1], B0678[2][1], GlmD[2][1], NagB[2][1] , ECK0666, glmD, JW0664, b0678

Product description

NagB[2][3];

Component of glucosamine-6-phosphate deaminase[2][3]

Glucosamine-6-phosphate deaminase; hexameric trimer of dimers[4]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0005737

cytoplasm

C

Seeded from Riley et al 2006 [1].

Missing: evidence, reference

GO:0004342

glucosamine-6-phosphate deaminase activity

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01241

F

Seeded from EcoCyc (v14.0)

complete

GO:0004342

glucosamine-6-phosphate deaminase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004547

F

Seeded from EcoCyc (v14.0)

complete

GO:0004342

glucosamine-6-phosphate deaminase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR018321

F

Seeded from EcoCyc (v14.0)

complete

GO:0004342

glucosamine-6-phosphate deaminase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR018322

F

Seeded from EcoCyc (v14.0)

complete

GO:0004342

glucosamine-6-phosphate deaminase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:3.5.99.6

F

Seeded from EcoCyc (v14.0)

complete

GO:0016787

hydrolase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0378

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of glucosamine-6-phosphate deaminase

could be indirect

Protein

dnaK

PMID:16606699[5]

Experiment(s):EBI-1137674

Protein

nuoE

PMID:16606699[5]

Experiment(s):EBI-1137674

Protein

tatE

PMID:16606699[5]

Experiment(s):EBI-1137674

Protein

arnA

PMID:16606699[5]

Experiment(s):EBI-1137674

Protein

stpA

PMID:16606699[5]

Experiment(s):EBI-1137674

Protein

nuoI

PMID:16606699[5]

Experiment(s):EBI-1137674

Protein

nadE

PMID:16606699[5]

Experiment(s):EBI-1137674

Protein

gntK

PMID:16606699[5]

Experiment(s):EBI-1137674

Protein

sapA

PMID:16606699[5]

Experiment(s):EBI-1137674

Protein

rplE

PMID:19402753[6]

MALDI(Z-score):22.075684

Protein

rplF

PMID:19402753[6]

MALDI(Z-score):22.056595

Protein

lysS

PMID:19402753[6]

MALDI(Z-score):16.833311

Protein

fusA

PMID:19402753[6]

MALDI(Z-score):26.805477

Protein

pflB

PMID:19402753[6]

MALDI(Z-score):28.448012

Protein

gapA

PMID:19402753[6]

MALDI(Z-score):36.355695

Protein

ugpB

PMID:19402753[6]

MALDI(Z-score):19.729265

Protein

adhE

PMID:19402753[6]

MALDI(Z-score):20.072346

Protein

rpsD

PMID:19402753[6]

MALDI(Z-score):23.814236

Protein

gadB

PMID:19402753[6]

MALDI(Z-score):18.408656

Protein

rplB

PMID:19402753[6]

MALDI(Z-score):33.537668

Protein

tig

PMID:19402753[6]

MALDI(Z-score):23.396279

Protein

eno

PMID:19402753[6]

MALDI(Z-score):32.621331

Protein

rpsJ

PMID:19402753[6]

MALDI(Z-score):19.132228

Protein

pgk

PMID:19402753[6]

MALDI(Z-score):32.169687

Protein

glpK

PMID:19402753[6]

MALDI(Z-score):24.698600

Protein

groS

PMID:19402753[6]

MALDI(Z-score):18.597115

Protein

tufB

PMID:19402753[6]

MALDI(Z-score):18.634822

Protein

phoA

PMID:19402753[6]

MALDI(Z-score):24.656734

Protein

tnaA

PMID:19402753[6]

MALDI(Z-score):23.947841

Protein

clpB

PMID:19402753[6]

MALDI(Z-score):27.905538

Protein

pstS

PMID:19402753[6]

MALDI(Z-score):36.912658

Protein

pta

PMID:19402753[6]

MALDI(Z-score):21.943806

Protein

sucC

PMID:19402753[6]

MALDI(Z-score):21.749805

Protein

rpoA

PMID:19402753[6]

MALDI(Z-score):28.657556

Protein

deoD

PMID:19402753[6]

MALDI(Z-score):24.591325

Protein

fbaB

PMID:19402753[6]

MALDI(Z-score):30.826109

Protein

cdd

PMID:19402753[6]

MALDI(Z-score):25.864730

Protein

treC

PMID:19402753[6]

MALDI(Z-score):19.284473

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MRLIPLTTAE QVGKWAARHI VNRINAFKPT ADRPFVLGLP TGGTPMTTYK ALVEMHKAGQ
VSFKHVVTFN MDEYVGLPKE HPESYYSFMH RNFFDHVDIP AENINLLNGN APDIDAECRQ
YEEKIRSYGK IHLFMGGVGN DGHIAFNEPA SSLASRTRIK TLTHDTRVAN SRFFDNDVNQ
VPKYALTVGV GTLLDAEEVM ILVLGSQKAL ALQAAVEGCV NHMWTISCLQ LHPKAIMVCD
EPSTMELKVK TLRYFNELEA ENIKGL
Length

266

Mol. Wt

29.773 kDa

pI

6.9 (calculated)

Extinction coefficient

22,920 - 23,420 (calc based on 8 Y, 2 W, and 4 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

15..250

PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase

PMID:19920124[7]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=nagB taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16128654

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945290

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0002304

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0A759

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10633

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10633

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945290

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000626

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0627

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 5.4 5.5 5.6 5.7 5.8 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ 6.00 6.01 6.02 6.03 6.04 6.05 6.06 6.07 6.08 6.09 6.10 6.11 6.12 6.13 6.14 6.15 6.16 6.17 6.18 6.19 6.20 6.21 6.22 6.23 6.24 6.25 6.26 6.27 6.28 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  7. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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