mltF:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

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Standard name

YfhD

Synonyms

predicted transglycosylase[1], B2558[2][1], YfhD[2][1] , ECK2556, JW2542, yfhD, b2558

Product description

predicted transglycosylase[2][3]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki. See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0005215

transporter activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001638

F

Seeded from EcoCyc (v14.0)

complete

GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-1003

C

Seeded from EcoCyc (v14.0)

complete

GO:0006810

transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001638

P

Seeded from EcoCyc (v14.0)

complete

GO:0007047

cellular cell wall organization

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0961

P

Seeded from EcoCyc (v14.0)

complete

GO:0008933

lytic transglycosylase activity

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_02016

F

Seeded from EcoCyc (v14.0)

complete

GO:0009279

cell outer membrane

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_02016

C

Seeded from EcoCyc (v14.0)

complete

GO:0009279

cell outer membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0998

C

Seeded from EcoCyc (v14.0)

complete

GO:0016020

membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0472

C

Seeded from EcoCyc (v14.0)

complete

GO:0016829

lyase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0456

F

Seeded from EcoCyc (v14.0)

complete

GO:0016837

carbon-oxygen lyase activity, acting on polysaccharides

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:4.2.2

F

Seeded from EcoCyc (v14.0)

complete

GO:0016998

cell wall macromolecule catabolic process

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_02016

P

Seeded from EcoCyc (v14.0)

complete

GO:0019898

extrinsic to membrane

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-9903

C

Seeded from EcoCyc (v14.0)

complete

GO:0030288

outer membrane-bounded periplasmic space

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001638

C

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MSTIHTPLTY NEINGKPFGL DYELAKQFAD YLGVKLKVTV RQNISQLFDD LDNGNADLLA
AGLVYNSERV KNYQPGPTYY SVSQQLVYKV GQYRPRTLGN LTAEQLTVAP GHVVVNDLQT
LKETKFPELS WKVDDKKGSA ELMEDVIEGK LDYTIADSVA ISLFQRVHPE LAVALDITDE
QPVTWFSPLD GDNTLSAALL DFFNEMNEDG TLARIEEKYL GHGDDFDYVD TRTFLRAVDA
VLPQLKPLFE KYAEEIDWRL LAAIAYQESH WDAQATSPTG VRGMMMLTKN TAQSLGITDR
TDAEQSISGG VRYLQDMMSK VPESVPENER IWFALAAYNM GYAHMLDARA LTAKTKGNPD
SWADVKQRLP LLSQKPYYSK LTYGYARGHE AYAYVENIRK YQISLVGYLQ EKEKQATEAA
MQLAQDYPAV SPTELGKEKF PFLSFLSQSS SNYLTHSPSL LFSRKGSEEK QN
Length

472

Mol. Wt

53.158 kDa

pI

4.9 (calculated)

Extinction coefficient

73,230 (calc based on 27 Y, 6 W, and 0 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

motif

1-21

UniProt Manual:Signal Peptides

UniProt:P0AGC5

Domain

45..268

PF00497 Bacterial extracellular solute-binding proteins, family 3

PMID:19920124[4]

Domain

292..407

PF01464 Transglycosylase SLT domain

PMID:19920124[4]

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=mltF taxon=562,83333 </beststructure>

Models

View models at:

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</protect>

Structure figures

<protect>

</protect>

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:171701683

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947028

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0008417

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0AGC5

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11373

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11373

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947028

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001341

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1347

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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