micC:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

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Standard name

MicC

Synonyms

regulatory sRNA[1], Tke8[2][1], IS063[2][1], MicC[2][1]

Product description

MicC small RNA[2][3]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0040033

negative regulation of translation, ncRNA-mediated

PMID:15466019[4]

IEP: Inferred from Expression Pattern

P

Seeded from EcoCyc (v14.0)

complete

GO:0040033

negative regulation of translation, ncRNA-mediated

PMID:17264113[5]

IEP: Inferred from Expression Pattern

P

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties

Type

sRNA

Sequence 
GUUAUAUGCC UUUAUUGUCA CAGAUUUUAU UUUCUGUUGG GCCAUUGCAU UGCCACUGAU
UUUCCAACAU AUAAAAAGAC AAGCCCGAAC AGUCGUCCGG GCUUUUUUU
Mol. Wt

34849.56

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Domains/Motifs/Modification Sites

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Type Residues Description Notes References
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Structure
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Structures

<beststructure> gene=micC taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:G0-8901

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG31144

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002612

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB4512

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0047248

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ Chen, S et al. (2004) MicC, a second small-RNA regulator of Omp protein expression in Escherichia coli. J. Bacteriol. 186 6689-97 PubMed
  5. ↑ Urban, JH & Vogel, J (2007) Translational control and target recognition by Escherichia coli small RNAs in vivo. Nucleic Acids Res. 35 1018-37 PubMed

Categories

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