mcbA:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

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Standard name

YbiM

Synonyms

predicted protein[1], B0806[2][1], YbiM[2][1] , ECK0795, JW5106, ybiM, b0806

Product description

predicted protein[2][3]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki. See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0042597

periplasmic space

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0574

C

Seeded from EcoCyc (v14.0)

complete

GO:0042597

periplasmic space

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0200

C

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MHVIDLSYFV KIYRSKNKHI SVNFLRHLHR AGDLHLSGTT RCIYEDVIMK KCLTLLIATV
LSGISLTAYA AQPMSNLDSG QLRPAGTVSA TGASNLSDLE DKLAEKAREQ GAKGYVINSA
GGNDQMFGTA TIYK
Length

134

Mol. Wt

14.575 kDa

pI

9.4 (calculated)

Extinction coefficient

8,940 - 9,190 (calc based on 6 Y, 0 W, and 2 C residues)

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Domains/Motifs/Modification Sites

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Type Residues Description Notes References

motif

1-22

UniProt Manual:Signal Peptides

UniProt:P0AAX6

Domain

17..86

PF07338 Protein of unknown function (DUF1471)

PMID:19920124[4]

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<motif_map/>

Structure
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Structures

<beststructure> gene=mcbA taxon=562,83333 </beststructure>

Models

View models at:

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</protect>

Structure figures

<protect>

</protect>

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:90111171

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947523

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0002753

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0AAX6

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6415

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13318

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947523

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003015

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3102

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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