intA:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

IntA

Synonyms

CP4-57 prophage; integrase[1], B2622[2][1], IntX[2][1], IntA[2][1] , ECK2618, intX, JW2602, slpA, b2622

Product description

prophage CP4-57; integrase[2][3]

Integrase gene, CP4-57 putative defective prophage[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0003677

DNA binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002104

F

Seeded from EcoCyc (v14.0)

complete

GO:0003677

DNA binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011010

F

Seeded from EcoCyc (v14.0)

complete

GO:0003677

DNA binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013762

F

Seeded from EcoCyc (v14.0)

complete

GO:0006310

DNA recombination

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002104

P

Seeded from EcoCyc (v14.0)

complete

GO:0006310

DNA recombination

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013762

P

Seeded from EcoCyc (v14.0)

complete

GO:0006310

DNA recombination

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0233

P

Seeded from EcoCyc (v14.0)

complete

GO:0015074

DNA integration

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002104

P

Seeded from EcoCyc (v14.0)

complete

GO:0015074

DNA integration

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013762

P

Seeded from EcoCyc (v14.0)

complete

GO:0015074

DNA integration

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0229

P

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

aceF

PMID:15690043[5]

Experiment(s):EBI-889517, EBI-886344

Protein

yihI

PMID:15690043[5]

Experiment(s):EBI-886344

Protein

frmA

PMID:15690043[5]

Experiment(s):EBI-887783

Protein

ebgA

PMID:15690043[5]

Experiment(s):EBI-887783

Protein

eda

PMID:15690043[5]

Experiment(s):EBI-887783

Protein

flgI

PMID:15690043[5]

Experiment(s):EBI-887783

Protein

glvG

PMID:15690043[5]

Experiment(s):EBI-887783

Protein

hupA

PMID:15690043[5]

Experiment(s):EBI-887783

Protein

nuoI

PMID:15690043[5]

Experiment(s):EBI-887783

Protein

rplI

PMID:15690043[5]

Experiment(s):EBI-887783

Protein

rpsA

PMID:15690043[5]

Experiment(s):EBI-887783

Protein

rpsE

PMID:15690043[5]

Experiment(s):EBI-887783

Protein

rpsG

PMID:15690043[5]

Experiment(s):EBI-887783

Protein

rpsM

PMID:15690043[5]

Experiment(s):EBI-887783

Protein

rpsN

PMID:15690043[5]

Experiment(s):EBI-887783

Protein

rpsP

PMID:15690043[5]

Experiment(s):EBI-887783

Protein

ycgX

PMID:15690043[5]

Experiment(s):EBI-887783

Protein

puuP

PMID:15690043[5]

Experiment(s):EBI-887783

Protein

ydhU

PMID:15690043[5]

Experiment(s):EBI-887783

Protein

ygiQ

PMID:15690043[5]

Experiment(s):EBI-887783

Protein

yhbY

PMID:15690043[5]

Experiment(s):EBI-887783

Protein

rplB

PMID:16606699[6]

Experiment(s):EBI-1143528

Protein

yihI

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

ppc

PMID:19402753[7]

LCMS(ID Probability):99.5

Protein

puuP

PMID:19402753[7]

LCMS(ID Probability):99.0

Protein

ydhU

PMID:19402753[7]

LCMS(ID Probability):99.0

Protein

frmA

PMID:19402753[7]

LCMS(ID Probability):99.0

Protein

ebgA

PMID:19402753[7]

LCMS(ID Probability):99.0

Protein

nuoI

PMID:19402753[7]

LCMS(ID Probability):99.0

Protein

flgI

PMID:19402753[7]

LCMS(ID Probability):99.0

Protein

ycgX

PMID:19402753[7]

LCMS(ID Probability):99.0

Protein

eda

PMID:19402753[7]

LCMS(ID Probability):99.0

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MARKTKPLTD TEIKAAKPKD ADYQLYDGDG LTLLIKSSGS KLWQFRYYRP LTKQRTKQSF
GAYPAVSLSD ARKLRAESKV LLAKDIDPQE HQKEQVRNSQ EAKTNTFLLV AERWWNVKKT
SVTEDYADDI WRSLERDIFP AIGDISITEI KAHTLVKAVQ PVQARGALET VRRLCQRINE
VMIYAQNTGL IDAVPSVNIG KAFEKPQKKN MPSIRPDQLP QLMHTMRTAS ISMSTRCLFM
WQLLTITRPA EAAEARWDEI DFNASEWKIP AARMKMNRDH TVPLSDGALA ILEMMKPLSG
GREFIFPSRI KPNQPMNSQT VNAALKRAGL GGVLVSHGLR SIASTALNEE GFPPDVIEAA
LAHVDKNEVR RAYNRSDYLE QRRPMMQWWA DLVKAADSGS IVLTHLSKIR LVG
Length

413

Mol. Wt

46.652 kDa

pI

10.0 (calculated)

Extinction coefficient

62,910 - 63,160 (calc based on 9 Y, 9 W, and 2 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

212..380

PF00589 Phage integrase family

PMID:19920124[8]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=intA taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16130540

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946160

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0008630

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P32053

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11783

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11783

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946160

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001717

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1731

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.00 5.01 5.02 5.03 5.04 5.05 5.06 5.07 5.08 5.09 5.10 5.11 5.12 5.13 5.14 5.15 5.16 5.17 5.18 5.19 5.20 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
  6. ↑ Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  7. ↑ 7.0 7.1 7.2 7.3 7.4 7.5 7.6 7.7 7.8 7.9 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  8. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

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