insQ:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

InsQ

Synonyms

predicted transposase[1], B1432[2][1], InsQ[2][1] , ECK1426, JW5228, orf2, orfB, tnpB, ydcM, b1432

Product description

putative virulence protein[2][3]

Function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

rpsC

PMID:19402753[5]

MALDI(Z-score):26.086029

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Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MKRLQAFKFQ LRPGGQQECE MRRFAGACRF VFNRALARQN ENHEAGNKYI PYGKMASWLV
EWKNATETQW LKDSPSQPLQ QSLKDLERAY KNFFRKRAAF PRFKKRGQND AFRYPQGVKL
DQENSRIFLP KLGWMRYRNS RQVTGVVKNV TVSQSCGKWY ISIQTESEVS TPVHPSASMV
GLDAGVAKLA TLSDGTVFEP VNSFQKNQKK LARLQRQLSR KVKFSNNWQK QKRKIQRLHS
CIANIRRDYL HKVTTAVSKN HAMIVIEDLK VSNMSKSAAG TVSQPGRNVR AKSGLNRSIL
DQGWYEMRRQ LAYKQLWRGG QVLAVPPAYT SQRCAYCGHT AKENRLSQSK FRCQVCGYTA
NADVNGARNI LAAGHAVLAC GEMVQSGRPL KQEPTEMIQA TA
Length

402

Mol. Wt

45.74 kDa

pI

10.7 (calculated)

Extinction coefficient

61,880 - 63,005 (calc based on 12 Y, 8 W, and 9 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

69..278

PF01385 Probable transposase

PMID:19920124[6]

Domain

304..373

PF07282 Putative transposase DNA-binding domain

PMID:19920124[6]

Domain

1..48

PF12323 Helix-turn-helix domain

PMID:19920124[6]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ydcM taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:288551665

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:944942

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0004778

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P76102

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6743

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13756

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:944942

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003332

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3519

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  6. ↑ 6.0 6.1 6.2 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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