inaA:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

InaA

Synonyms

conserved protein[1], B2237[2][1], YfaG[2][1], InaA[2][1] , ECK2229, JW2231, yfaG, b2237

Product description

pH-inducible protein involved in stress response[2][3]

Protein induced by acid, independent of SoxRS regulation[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR010440

F

Seeded from EcoCyc (v14.0)

complete

GO:0009103

lipopolysaccharide biosynthetic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR010440

P

Seeded from EcoCyc (v14.0)

complete

GO:0016020

membrane

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR010440

C

Seeded from EcoCyc (v14.0)

complete

GO:0016773

phosphotransferase activity, alcohol group as acceptor

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR010440

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

rpsM

PMID:16606699[5]

Experiment(s):EBI-1142289

Protein

yaeJ

PMID:16606699[5]

Experiment(s):EBI-1142289

Protein

groL

PMID:16606699[5]

Experiment(s):EBI-1142289

Protein

ymfG

PMID:16606699[5]

Experiment(s):EBI-1142289

Protein

yghW

PMID:16606699[5]

Experiment(s):EBI-1142289

Protein

tatE

PMID:16606699[5]

Experiment(s):EBI-1142289
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MAVSAKYDEF NHWWATEGDW VEEPNYRRNG MSGVQCVERN GKKLYVKRMT HHLFHSVRYP
FGRPTIVREV AVIKELERAG VIVPKIVFGE AVKIEGEWRA LLVTEDMAGF ISIADWYAQH
AVSPYSDEVR QAMLKAVALA FKKMHSINRQ HGCCYVRHIY VKTEGNAEAG FLDLEKSRRR
LRRDKAINHD FRQLEKYLEP IPKADWEQVK AYYYAM
Length

216

Mol. Wt

25.295 kDa

pI

9.4 (calculated)

Extinction coefficient

50,880 - 51,255 (calc based on 12 Y, 6 W, and 3 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

11..213

PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family

PMID:19920124[6]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=inaA taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16130172

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946731

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007393

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P27294

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11422

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11422

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946731

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001386

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1392

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 5.4 5.5 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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