hyi:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

Hyi

Synonyms

hydroxypyruvate isomerase[1], B0508[2][1], YbbG[2][1], Hyi[2][1], glyoxylate-induced protein[2][1], Gip[2][1] , ECK0501, gip, JW0496, ybbG, b0508

Product description

G6277[2][3];

Component of hydroxypyruvate isomerase[2][3]

Hydroxypyruvate isomerase, glyoxylate-inducible; product is tartronate semialdehyde[4]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0008903

hydroxypyruvate isomerase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:5.3.1.22

F

Seeded from EcoCyc (v14.0)

complete

GO:0016853

isomerase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0413

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of hydroxypyruvate isomerase

could be indirect

Protein

hflB

PMID:16606699[5]

Experiment(s):EBI-1136963

Protein

ypeC

PMID:16606699[5]

Experiment(s):EBI-1136963

Protein

rplQ

PMID:16606699[5]

Experiment(s):EBI-1136963

Protein

nadE

PMID:16606699[5]

Experiment(s):EBI-1136963

Protein

ybaA

PMID:16606699[5]

Experiment(s):EBI-1136963

Protein

ahpC

PMID:16606699[5]

Experiment(s):EBI-1136963

Protein

nanE

PMID:19402753[6]

LCMS(ID Probability):99.4

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MLRFSANLSM LFGEYDFLAR FEKAAQCGFR GVEFMFPYDY DIEELKHVLA SNKLEHTLHN
LPAGDWAAGE RGIACIPGRE EEFRDGVAAA IRYARALGNK KINCLVGKTP AGFSSEQIHA
TLVENLRYAA NMLMKEDILL LIEPINHFDI PGFHLTGTRQ ALKLIDDVGC CNLKIQYDIY
HMQRMEGELT NTMTQWADKI GHLQIADNPH RGEPGTGEIN YDYLFKVIEN SDYNGWVGCE
YKPQTTTEAG LRWMDPYR
Length

258

Mol. Wt

29.378 kDa

pI

5.4 (calculated)

Extinction coefficient

39,880 - 40,630 (calc based on 12 Y, 4 W, and 6 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

21..219

PF01261 Xylose isomerase-like TIM barrel

PMID:19920124[7]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=hyi taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16128492

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946186

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001756

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P30147

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6277

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11584

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946186

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002885

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1543

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 5.4 5.5 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  7. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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