hyfB:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

HyfB

Synonyms

hydrogenase 4, membrane subunit[1], B2482[2][1], YffF[2][1], HyfB[2][1] , ECK2478, JW2467, yffF, b2482

Product description

hydrogenase 4, component B[2][3];

Component of hydrogenase 4[3]

Putative hydrogenase 4 component B; membrane protein of Hyf electron transfer complex of FHL system[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0997

C

Seeded from EcoCyc (v14.0)

complete

GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-1003

C

Seeded from EcoCyc (v14.0)

complete

GO:0008137

NADH dehydrogenase (ubiquinone) activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001750

F

Seeded from EcoCyc (v14.0)

complete

GO:0008137

NADH dehydrogenase (ubiquinone) activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003918

F

Seeded from EcoCyc (v14.0)

complete

GO:0016020

membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0472

C

Seeded from EcoCyc (v14.0)

complete

GO:0016021

integral to membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0812

C

Seeded from EcoCyc (v14.0)

complete

GO:0016021

integral to membrane

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-9909

C

Seeded from EcoCyc (v14.0)

complete

GO:0016491

oxidoreductase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0560

F

Seeded from EcoCyc (v14.0)

complete

GO:0042773

ATP synthesis coupled electron transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001750

P

Seeded from EcoCyc (v14.0)

complete

GO:0042773

ATP synthesis coupled electron transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003918

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001750

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003918

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0560

P

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of hydrogenase 4

could be indirect


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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

plasma membrane

C-terminus localized to the periplasm with 16 predicted transmembrane domains

Daley et al. (2005) [5]

plasma membrane

From EcoCyc[3]


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MDALQLLTWS LILYLFASLA SLFLLGLDRL AIKLSGITSL VGGVIGIISG ITQLHAGVTL
VARFAPPFEF ADLTLRMDSL SAFMVLVISL LVVVCSLYSL TYMREYEGKG AAAMGFFMNI
FIASMVALLV MDNAFWFIVL FEMMSLSSWF LVIARQDKTS INAGMLYFFI AHAGSVLIMI
AFLLMGRESG SLDFASFRTL SLSPGLASAV FLLAFFGFGA KAGMMPLHSW LPRAHPAAPS
HASALMSGVM VKIGIFGILK VAMDLLAQTG LPLWWGILVM AIGAISALLG VLYALAEQDI
KRLLAWSTVE NVGIILLAVG VAMVGLSLHD PLLTVVGLLG ALFHLLNHAL FKGLLFLGAG
AIISRLHTHD MEKMGALAKR MPWTAAACLI GCLAISAIPP LNGFISEWYT WQSLFSLSRV
EAVALQLAGP IAMVMLAVTG GLAVMCFVKM YGITFCGAPR STHAEEAQEV PNTMIVAMLL
LAALCVLIAL SASWLAPKIM HIAHAFTNTP PATVASGIAL VPGTFHTQVT PSLLLLLLLA
MPLLPGLYWL WCRSRRAAFR RTGDAWACGY GWENAMAPSG NGVMQPLRVV FSALFRLRQQ
LDPTLRLNKG LAHVTARAQS TEPFWDERVI RPIVSATQRL AKEIQHLQSG DFRLYCLYVV
AALVVLLIAI AV
Length

672

Mol. Wt

72.585 kDa

pI

9.1 (calculated)

Extinction coefficient

105,880 - 107,005 (calc based on 12 Y, 16 W, and 9 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

131..414

PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains

PMID:19920124[6]

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<motif_map/>

tmhmm.php?gene=hyfB&show=pic&.jpg
Click the image to view raw output from TMHMM.

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=hyfB taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16130407

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946961

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0008181

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P23482

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11282

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11282

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946961

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001255

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1259

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Daley, DO et al. (2005) Global topology analysis of the Escherichia coli inner membrane proteome. Science 308 1321-3 PubMed
  6. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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