hyaF:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

HyaF

Synonyms

protein involved in nickel incorporation into hydrogenase-1 proteins[1], B0977[2][1], HyaF[2][1] , ECK0968, JW0959, b0977

Product description

protein involved in nickel incorporation into hydrogenase 1 proteins[2][3]

Nickel incorporation into hydrogenase 1 ssubunits[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0016151

nickel ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0533

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

napC

PMID:16606699[5]

Experiment(s):EBI-1138525

Protein

dnaK

PMID:16606699[5]

Experiment(s):EBI-1138525

Protein

wbbJ

PMID:16606699[5]

Experiment(s):EBI-1138525

Protein

rpsC

PMID:16606699[5]

Experiment(s):EBI-1138525

Protein

matC

PMID:16606699[5]

Experiment(s):EBI-1138525

Protein

nadE

PMID:16606699[5]

Experiment(s):EBI-1138525

Protein

rpsE

PMID:16606699[5]

Experiment(s):EBI-1138525
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MSETFFHLLG PGTQPNDDSF SMNPLPITCQ VNDEPSMAAL EQCAHSPQVI ALLNELQHQL
SERQPPLGEV LAVDLLNLNA DDRHFINTLL GEGEVSVRIQ QADDSESEIQ EAIFCGLWRV
RRRRGEKLLE DKLEAGCAPL ALWQAATQNL LPTDSLLPPP IDGLMNGLPL AHELLAHVRN
PDAQPHSINL TQLPISEADR LFLSRLCGPG NIQIRTIGYG ESYINATGLR HVWHLRCTDT
LKGPLLESYE ICPIPEVVLA APEDLVDSAQ RLSEVCQWLA EAAPT
Length

285

Mol. Wt

31.43 kDa

pI

4.5 (calculated)

Extinction coefficient

26,470 - 27,470 (calc based on 3 Y, 4 W, and 8 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

47..155

PF04809 HupH hydrogenase expression protein, C-terminal conserved region

PMID:19920124[6]

Domain

163..280

PF04809 HupH hydrogenase expression protein, C-terminal conserved region

PMID:19920124[6]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=hyaF taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16128943

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945572

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0003296

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P19932

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10473

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10473

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945572

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000466

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0468

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 5.4 5.5 5.6 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ 6.0 6.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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