hofO:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

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Standard name

YrfB

Synonyms

conserved membrane protein[1], B3393[2][1], HofO[2][1], YrfB[2][1] , ECK3380, JW3356, yrfB, b3393

Product description

protein involved in utilization of DNA as a carbon source[2][3]

Required for the utilization of DNA as a carbon source; H. influenzae competence protein ComC homolog; putative fimbrial transport protein[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
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Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MNMFFDWWFA TSPRLRQLCW AFWLLMLVTL IFLSSTHHEE RDALIRLRAS HHQQWAALYR
LVDTAPFSEE KTLPFSPLDF QLSGAQLVSW HPSAQGGELA LKTLWEAVPS AFTRLAERNV
SVSRFSLSVE GDDLLFTLQL ETPHEG
Length

146

Mol. Wt

16.846 kDa

pI

5.9 (calculated)

Extinction coefficient

39,990 - 40,115 (calc based on 1 Y, 7 W, and 1 C residues)

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Domains/Motifs/Modification Sites

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Type Residues Description Notes References
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Structure
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Structures

<beststructure> gene=hofO taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16131270

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947899

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0011075

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P45751

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7737

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12923

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947899

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004280

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2759

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.

Categories

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