hofM:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

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Standard name

YrfD

Synonyms

predicted pilus assembly protein[1], B3395[2][1], HofM[2][1], YrfD[2][1] , ECK3382, JW5693, yrfD, b3395

Product description

protein involved in utilization of DNA as a carbon source[2][3]

Required for the utilization of DNA as a carbon source; H. influenzae competence protein ComA homolog; putative fimbrial transport protein[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
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Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MTGDKEIITM AFKIWQIGLH LQQQEAVAVA IVRGAKECFL QRWWRLPLEN DIIKDGRIVD
AQQLAKTLLP WSRELPQRHH IMLAFPASRT LQRSFPRPSM SLGEREQTAW LSGTMARELD
MDPDSLRFDY SEDSLSPAYN VTAAQSKELA TLLTLAERLR VHVSAITPDA SALQRFLPFL
PSHQQCLAWR DNEQWLWATR YSWGRKLAVG MTSAKELAAA LSVDPESVAI CGEGGFDPWE
AVSVRQPPLP PPGGDFAIAL GLALGKAY
Length

268

Mol. Wt

29.989 kDa

pI

6.7 (calculated)

Extinction coefficient

60,960 - 61,335 (calc based on 4 Y, 10 W, and 3 C residues)

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Domains/Motifs/Modification Sites

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Type Residues Description Notes References
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<motif_map/>

Structure
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Structures

<beststructure> gene=hofM taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:90111583

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947908

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0011079

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P45753

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7739

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12925

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947908

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004282

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2761

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.

Categories

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