gutQ:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

GutQ

Synonyms

predicted phosphosugar-binding protein[1], B2708[2][1], SrlQ[2][1], GutQ[2][1] , ECK2703, JW5431, srlQ, b2708

Product description

D-arabinose 5-phosphate isomerase[2][3];

Component of D-arabinose 5-phosphate isomerase[3]

D-arabinose 5-phosphate isomerase[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0000166

nucleotide binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0547

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0067

F

Seeded from EcoCyc (v14.0)

complete

GO:0005529

sugar binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001347

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of D-arabinose 5-phosphate isomerase

could be indirect


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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

membrane

From EcoCyc[3]


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MLELQEASRL PERLGDDFVR AANIILHCEG KVVVSGIGKS GHIGKKIAAT LASTGTPAFF
VHPAEALHGD LGMIESRDVM LFISYSGGAK ELDLIIPRLE DKSIALLAMT GKPTSPLGLA
AKAVLDISVE REACPMHLAP TSSTVNTLMM GDALAMAVMQ ARGFNEEDFA RSHPAGALGA
RLLNKVHHLM RRDDAIPQVA LTASVMDAML ELSRTGLGLV AVCDAQQQVQ GVFTDGDLRR
WLVGGGALTT PVNEAMTVGG TTLQSQSRAI DAKEILMKRK ITAAPVVDEN GKLTGAINLQ
DFYQAGII
Length

308

Mol. Wt

32.646 kDa

pI

6.3 (calculated)

Extinction coefficient

8,480 - 8,855 (calc based on 2 Y, 1 W, and 3 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

199..257

PF00571 CBS domain

PMID:19920124[5]

Domain

265..319

PF00571 CBS domain

PMID:19920124[5]

Domain

38..170

PF01380 SIS domain

PMID:19920124[5]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=gutQ taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:90111480

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947587

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0008902

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P17115

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10973

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10973

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947587

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000962

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0966

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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