gfcD:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YmcA

Synonyms

conserved protein[1], B0984[2][1], YmcA[2][1], GfcD[2][1] , ECK0975, JW0967, ymcA, b0984

Product description

conserved protein[2]; putative lipoprotein[3]

Required for formation of the O-antigen capsule; silenced by IS1D insertion in promoter region[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-1003

C

Seeded from EcoCyc (v14.0)

complete

GO:0016020

membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0472

C

Seeded from EcoCyc (v14.0)

complete

GO:0031225

anchored to membrane

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-9901

C

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MKKNSYLLSC LAIAVSSACH AEVLTYPDPL GSSQSDFGGT GLLQMPNARI APEGEFSVNY
RDNDQYRFYS TSVALFPWLE GTIRYTDVRT RKYSQWEDFS GDQSYKDKSF DFKLRLWEEG
YWLPQVAFGK RDIAGTGLFD GEYLVASKQA GPFDFTLGMA WGYAGNAGNI TNPFCRVSDK
YCHRAESHDA GDISFSDIFR GPASIFGGIE YQTPWNPLRL KLEYDGNNYQ NDFAGKLPQA
SHFNVGAVYR AASWADLNLS YERGNTLMFG FTLRTNFNDL RPALRDTPKP AYQPAPESEG
LQYTTVANQL TALKYNAGFD APEIQLRDKT LYMSGQQYKY RDSREAVDRA NRILVNNLPQ
GVEKISVTQK REHMAMVTTE TDVASLRKQL AGTAPGQSEP LQQQRVEAED LSAFGRGYRI
REDRFSYSFN PTLSQSLGGP EDFYMFQLGL MSSARYWFTD HLLLDGGIFT NIYNNYDKFK
SSLLPADSTL PRVRTHIRDY VRNDVYLNNL QANYFADLGN GFYGQVYGGY LETMYAGVGS
ELLYRPLDAC WALGVDVNYV KQRDWDNMMR FTDYSTPTGF VTAYWNPPTL NGVLMKLSVG
QYLAKDKGAT IDVAKRFDSG VAVGVWAAIS NVSKDDYGEG GFSKGFYISI PFDLMTIGPN
RNRAVVSWTP LTRDGGQMLS RKYQLYPMTA EREVPVGQ
Length

698

Mol. Wt

78.689 kDa

pI

6.1 (calculated)

Extinction coefficient

138,550 - 139,175 (calc based on 45 Y, 13 W, and 5 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

motif

1-18

UniProt Manual:Signal Peptides

UniProt:P75882

Domain

32..692

PF06082 Bacterial putative lipoprotein (DUF940)

PMID:19920124[5]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=gfcD taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16128950

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945588

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0003319

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P75882

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6505

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13729

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945588

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003105

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3493

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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