gatY:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

GatY

Synonyms

D-tagatose 1,6-bisphosphate aldolase 2, catalytic subunit[1], B2096[2][1], YegF[2][1], GatY[2][1] , ECK2089, JW5343, yegF, b2096

Product description

GatY[2][3];

Component of tagatose-1,6-bisphosphate aldolase 2[3]

D-Tagatose-1,6-bisphosphate aldolase, class II; requires GatZ subunit for full activity and stability[4]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0005737

cytoplasm

C

Seeded from Riley et al 2006 [1].

Missing: evidence, reference

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of tagatose-1,6-bisphosphate aldolase 2

could be indirect

Protein

dnaK

PMID:15690043[5]

Experiment(s):EBI-880261, EBI-885585

Protein

malT

PMID:15690043[5]

Experiment(s):EBI-880261

Protein

truA

PMID:15690043[5]

Experiment(s):EBI-880261

Protein

tufA

PMID:15690043[5]

Experiment(s):EBI-880261, EBI-885585

Protein

tufB

PMID:19402753[6]

MALDI(Z-score):23.829312

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MKMYVVSTKQ MLNNAQRGGY AVPAFNIHNL ETMQVVVETA ANLHAPVIIA GTPGTFTHAG
TENLLALVSA MAKQYHHPLA IHLDHHTKFD DIAQKVRSGV RSVMIDASHL PFAQNISRVK
EVVDFCHRFD VSVEAELGQL GGQEDDVQVN EADALYTNPA QAREFAEATG IDSLAVAIGT
AHGMYASAPA LDFSRLENIR QWVNLPLVLH GASGLSTKDI QQTIKLGICK INVATELKNA
FSQALKNYLT EHPEATDPRD YLQSAKSAMR DVVSKVIADC GCEGRA
Length

286

Mol. Wt

31.07 kDa

pI

6.4 (calculated)

Extinction coefficient

15,930 - 16,430 (calc based on 7 Y, 1 W, and 4 C residues)

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Domains/Motifs/Modification Sites

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Type Residues Description Notes References

Modification Site

115

phosphorylation site at S115

probability greater than 75%

PMID:17938405[7]

Modification Site

211

phosphorylation site at S211

probability greater than 75%

PMID:17938405[7]

Modification Site

214

phosphorylation site at S214

probability less than 75%

PMID:17938405[7]

Modification Site

215

phosphorylation site at T215

probability less than 75%

PMID:17938405[7]

Domain

2..284

PF01116 Fructose-bisphosphate aldolase class-II

PMID:19920124[8]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=gatY taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:90111384

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946636

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0006938

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P37192

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG12419

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12419

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946636

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002278

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2318

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
  6. ↑ Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  7. ↑ 7.0 7.1 7.2 7.3 Macek, B et al. (2008) Phosphoproteome analysis of E. coli reveals evolutionary conservation of bacterial Ser/Thr/Tyr phosphorylation. Mol. Cell Proteomics 7 299-307 PubMed
  8. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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