fimB:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

FimB

Synonyms

tyrosine recombinase/inversion of on/off regulator of fimA[1], B4312[2][1], Pil[2][1], FimB[2][1] , ECK4303, JW4275, b4312

Product description

regulator for fimA[2][3]

Site-specific recombinase, fimA promoter inversion; mediates flagellar phase switching, along with FimE[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0003677

DNA binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002104

F

Seeded from EcoCyc (v14.0)

complete

GO:0003677

DNA binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011010

F

Seeded from EcoCyc (v14.0)

complete

GO:0003677

DNA binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013762

F

Seeded from EcoCyc (v14.0)

complete

GO:0006310

DNA recombination

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002104

P

Seeded from EcoCyc (v14.0)

complete

GO:0006310

DNA recombination

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013762

P

Seeded from EcoCyc (v14.0)

complete

GO:0006310

DNA recombination

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0233

P

Seeded from EcoCyc (v14.0)

complete

GO:0006350

transcription

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0804

P

Seeded from EcoCyc (v14.0)

complete

GO:0015074

DNA integration

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002104

P

Seeded from EcoCyc (v14.0)

complete

GO:0015074

DNA integration

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013762

P

Seeded from EcoCyc (v14.0)

complete

GO:0015074

DNA integration

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0229

P

Seeded from EcoCyc (v14.0)

complete

GO:0006974

response to DNA damage stimulus

PMID:11967071[5]

IEP: Inferred from Expression Pattern

P

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

aceF

PMID:15690043[6]

Experiment(s):EBI-887941

Protein

rplB

PMID:15690043[6]

Experiment(s):EBI-887941

Protein

rpsC

PMID:15690043[6]

Experiment(s):EBI-887941, EBI-891005

Protein

rpsD

PMID:15690043[6]

Experiment(s):EBI-887941

Protein

rpsG

PMID:15690043[6]

Experiment(s):EBI-887941, EBI-891005

Protein

rplC

PMID:15690043[6]

Experiment(s):EBI-891005

Protein

rplM

PMID:15690043[6]

Experiment(s):EBI-891005

Protein

rplS

PMID:15690043[6]

Experiment(s):EBI-891005

Protein

rplU

PMID:15690043[6]

Experiment(s):EBI-891005

Protein

rplV

PMID:15690043[6]

Experiment(s):EBI-891005

Protein

rplX

PMID:15690043[6]

Experiment(s):EBI-891005

Protein

rpmB

PMID:15690043[6]

Experiment(s):EBI-891005

Protein

rpsE

PMID:15690043[6]

Experiment(s):EBI-891005

Protein

rpsF

PMID:15690043[6]

Experiment(s):EBI-891005

Protein

rpsH

PMID:15690043[6]

Experiment(s):EBI-891005

Protein

rpsN

PMID:15690043[6]

Experiment(s):EBI-891005

Protein

rpsP

PMID:15690043[6]

Experiment(s):EBI-891005

Protein

rpsR

PMID:15690043[6]

Experiment(s):EBI-891005

Protein

rpsT

PMID:15690043[6]

Experiment(s):EBI-891005

Protein

rplQ

PMID:16606699[7]

Experiment(s):EBI-1147856

Protein

yciH

PMID:16606699[7]

Experiment(s):EBI-1147856

Protein

rpsC

PMID:16606699[7]

Experiment(s):EBI-1147856

Protein

rplU

PMID:19402753[8]

LCMS(ID Probability):99.6

Protein

rplM

PMID:19402753[8]

LCMS(ID Probability):99.6

Protein

rplS

PMID:19402753[8]

LCMS(ID Probability):99.6

Protein

rplX

PMID:19402753[8]

LCMS(ID Probability):99.6

Protein

rpsP

PMID:19402753[8]

LCMS(ID Probability):99.5

Protein

rpsF

PMID:19402753[8]

LCMS(ID Probability):99.6

Protein

rpsR

PMID:19402753[8]

LCMS(ID Probability):99.6

Protein

rpsH

PMID:19402753[8]

LCMS(ID Probability):99.6

Protein

rpsC

PMID:19402753[8]

LCMS(ID Probability):99.6 MALDI(Z-score):17.053160

Protein

atpA

PMID:19402753[8]

MALDI(Z-score):24.077980

Protein

yedR

PMID:19402753[8]

LCMS(ID Probability):95.6

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MKNKADNKKR NFLTHSEIES LLKAANTGPH AARNYCLTLL CFIHGFRASE ICRLRISDID
LKAKCIYIHR LKKGFSTTHP LLNKEVQALK NWLSIRTSYP HAESEWVFLS RKGNPLSRQQ
FYHIISTSGG NAGLSLEIHP HMLRHSCGFA LANMGIDTRL IQDYLGHRNI RHTVWYTASN
AGRFYGIWDR ARGRQRHAVL
Length

200

Mol. Wt

22.994 kDa

pI

10.5 (calculated)

Extinction coefficient

32,430 - 33,055 (calc based on 7 Y, 4 W, and 5 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

11..183

PF00589 Phage integrase family

PMID:19920124[9]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=fimB taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16132133

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948832

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0014141

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0ADH5

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10309

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10309

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948832

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000303

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0305

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Khil, PP & Camerini-Otero, RD (2002) Over 1000 genes are involved in the DNA damage response of Escherichia coli. Mol. Microbiol. 44 89-105 PubMed
  6. ↑ 6.00 6.01 6.02 6.03 6.04 6.05 6.06 6.07 6.08 6.09 6.10 6.11 6.12 6.13 6.14 6.15 6.16 6.17 6.18 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
  7. ↑ 7.0 7.1 7.2 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  8. ↑ 8.00 8.01 8.02 8.03 8.04 8.05 8.06 8.07 8.08 8.09 8.10 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  9. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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