fbaB:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

FbaB

Synonyms

fructose-bisphosphate aldolase class I[1], B2097[2][1], DhnA[2][1], FbaB[2][1] , dhnA, ECK2090, JW5344, b2097

Product description

fructose bisphosphate aldolase[2][3];

Component of fructose bisphosphate aldolase class I[2][3]

Fructose 1,6-bisphosphate aldolase, class I[4]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0003824

catalytic activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013785

F

Seeded from EcoCyc (v14.0)

complete

GO:0004332

fructose-bisphosphate aldolase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:4.1.2.13

F

Seeded from EcoCyc (v14.0)

complete

GO:0005829

cytosol

PMID:16858726[5]

IDA: Inferred from Direct Assay

C

Seeded from EcoCyc (v14.0)

complete

GO:0006096

glycolysis

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0324

P

Seeded from EcoCyc (v14.0)

complete

GO:0008152

metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013785

P

Seeded from EcoCyc (v14.0)

complete

GO:0016020

membrane

PMID:16858726[5]

IDA: Inferred from Direct Assay

C

Seeded from EcoCyc (v14.0)

complete

GO:0016829

lyase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002915

F

Seeded from EcoCyc (v14.0)

complete

GO:0016829

lyase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0456

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of fructose bisphosphate aldolase class I

could be indirect

Protein

groL

PMID:15690043[6]

Experiment(s):EBI-889533, EBI-894549

Protein

ybbN

PMID:15690043[6]

Experiment(s):EBI-889533, EBI-894549

Protein

dnaJ

PMID:15690043[6]

Experiment(s):EBI-894549

Protein

dnaK

PMID:15690043[6]

Experiment(s):EBI-894549

Protein

dnaJ

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

groL

PMID:19402753[7]

LCMS(ID Probability):99.6 MALDI(Z-score):17.053160

Protein

ybbN

PMID:19402753[7]

LCMS(ID Probability):99.6 MALDI(Z-score):25.951633

Protein

groS

PMID:19402753[7]

LCMS(ID Probability):99.6 MALDI(Z-score):28.451636

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MIARKRRART IHSRYPIGIY GSIVMTDIAQ LLGKDADNLL QHRCMTIPSD QLYLPGHDYV
DRVMIDNNRP PAVLRNMQTL YNTGRLAGTG YLSILPVDQG VEHSAGASFA ANPLYFDPKN
IVELAIEAGC NCVASTYGVL ASVSRRYAHR IPFLVKLNHN ETLSYPNTYD QTLYASVEQA
FNMGAVAVGA TIYFGSEESR RQIEEISAAF ERAHELGMVT VLWAYLRNSA FKKDGVDYHV
SADLTGQANH LAATIGADIV KQKMAENNGG YKAINYGYTD DRVYSKLTSE NPIDLVRYQL
ANCYMGRAGL INSGGAAGGE TDLSDAVRTA VINKRAGGMG LILGRKAFKK SMADGVKLIN
AVQDVYLDSK ITIA
Length

374

Mol. Wt

40.907 kDa

pI

8.4 (calculated)

Extinction coefficient

38,280 - 38,780 (calc based on 22 Y, 1 W, and 4 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Initiator Methionine

1

Removed

UniProt:P0A991

Domain

68..326

PF01791 DeoC/LacD family aldolase

PMID:19920124[8]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=fbaB taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:90111385

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946632

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0006941

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0A991

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7129

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG14062

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946632

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003712

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3815

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 Lasserre, JP et al. (2006) A complexomic study of Escherichia coli using two-dimensional blue native/SDS polyacrylamide gel electrophoresis. Electrophoresis 27 3306-21 PubMed
  6. ↑ 6.0 6.1 6.2 6.3 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
  7. ↑ 7.0 7.1 7.2 7.3 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  8. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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