envY:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

EnvY

Synonyms

DNA-binding transcriptional activator of porin biosynthesis[1], B0566[2][1], EnvY[2][1], envelope protein; thermoregulation of porin biosynthesis[2][1] , ECK0558, JW0555, b0566

Product description

EnvY transcriptional activator[2][3]

Thermoregulatory activator of porin expression, AraC family[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0003677

DNA binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR012287

F

Seeded from EcoCyc (v14.0)

complete

GO:0003677

DNA binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0238

F

Seeded from EcoCyc (v14.0)

complete

GO:0003700

transcription factor activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000005

F

Seeded from EcoCyc (v14.0)

complete

GO:0003700

transcription factor activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR020449

F

Seeded from EcoCyc (v14.0)

complete

GO:0005622

intracellular

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000005

C

Seeded from EcoCyc (v14.0)

complete

GO:0005622

intracellular

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR020449

C

Seeded from EcoCyc (v14.0)

complete

GO:0006350

transcription

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0804

P

Seeded from EcoCyc (v14.0)

complete

GO:0006355

regulation of transcription, DNA-dependent

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000005

P

Seeded from EcoCyc (v14.0)

complete

GO:0006355

regulation of transcription, DNA-dependent

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR020449

P

Seeded from EcoCyc (v14.0)

complete

GO:0043565

sequence-specific DNA binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000005

F

Seeded from EcoCyc (v14.0)

complete

GO:0043565

sequence-specific DNA binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR020449

F

Seeded from EcoCyc (v14.0)

complete

GO:0045449

regulation of transcription

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR012287

P

Seeded from EcoCyc (v14.0)

complete

GO:0045449

regulation of transcription

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0805

P

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

groL

PMID:16606699[5]

Experiment(s):EBI-1137180

Protein

ahpF

PMID:16606699[5]

Experiment(s):EBI-1137180

Protein

allC

PMID:16606699[5]

Experiment(s):EBI-1137180

Protein

btuF

PMID:16606699[5]

Experiment(s):EBI-1137180

Protein

intB

PMID:16606699[5]

Experiment(s):EBI-1137180

Protein

yjdA

PMID:16606699[5]

Experiment(s):EBI-1137180

Protein

fes

PMID:16606699[5]

Experiment(s):EBI-1137180

Protein

rob

PMID:16606699[5]

Experiment(s):EBI-1137180

Protein

nagZ

PMID:16606699[5]

Experiment(s):EBI-1137180

Protein

hyfR

PMID:16606699[5]

Experiment(s):EBI-1137180

Protein

recG

PMID:16606699[5]

Experiment(s):EBI-1137180

Protein

htpG

PMID:16606699[5]

Experiment(s):EBI-1137180
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MQLSSSEPCV VILTEKEVEV SVNNHATFTL PKNYLAAFAC NNNVIELSTL NHVLITHINR
NIINDYLLFL NKNLTCVKPW SRLATPVIAC HSRTPEVFRL AANHSKQQPS RPCEAELTRA
LLFTVLSNFL EQSRFIALLM YILRSSVRDS VCRIIQSDIQ HYWNLRIVAS SLCLSPSLLK
KKLKNENTSY SQIVTECRMR YAVQMLLMDN KNITQVAQLC GYSSTSYFIS VFKAFYGLTP
LNYLAKQRQK VMW
Length

253

Mol. Wt

29.018 kDa

pI

9.6 (calculated)

Extinction coefficient

31,400 - 32,525 (calc based on 10 Y, 3 W, and 9 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

155..195

PF00165 Bacterial regulatory helix-turn-helix proteins, AraC family

PMID:19920124[6]

Domain

206..245

PF00165 Bacterial regulatory helix-turn-helix proteins, AraC family

PMID:19920124[6]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=envY taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16128549

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:949114

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001935

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P10805

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10268

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10268

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:949114

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000262

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0264

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.00 5.01 5.02 5.03 5.04 5.05 5.06 5.07 5.08 5.09 5.10 5.11 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ 6.0 6.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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