emtA:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

EmtA

Synonyms

lytic murein endotransglycosylase E[1], B1193[2][1], YcgP[2][1], SltZ[2][1], EmtA[2][1], MltE[2][1] , ECK1181, JW5821, mltE, sltZ, ycgP, b1193

Product description

murein transglycosylase E[2][3]

Membrane-bound lytic transglycosylase E, lipoprotein; involved in limited murein hydrolysis[4]

EC number (for enzymes) 
3.2.1.-[1]
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0008932

lytic endotransglycosylase activity

PMID:9642199[5]

IDA: Inferred from Direct Assay

F

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

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Compartment Description Evidence Reference/Source Notes

Outer membrane

PMID:15174130

EchoLocation:emtA


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MKQRHGNSLL TTETKCISCR LGVPLSPQRR FQAIRIEEVK LRWFAFLIVL LAGCSSKHDY
TNPPWNAKVP VQRAMQWMPI SQKAGAAWGV DPQLITAIIA IESGGNPNAV SKSNAIGLMQ
LKASTSGRDV YRRMGWSGEP TTSELKNPER NISMGAAYLN ILETGPLAGI EDPKVLQYAL
VVSYANGAGA LLRTFSSDRK KAISKINDLD ADEFLEHVAR NHPAPQAPRY IYKLEQALDA M
Length

241

Mol. Wt

26.575 kDa

pI

9.8 (calculated)

Extinction coefficient

37,930 - 38,305 (calc based on 7 Y, 5 W, and 3 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

motif

1-15

UniProt Manual:Signal Peptides

UniProt:P76009

Domain

41..169

PF01464 Transglycosylase SLT domain

PMID:19920124[6]

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Structure
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Structures

<beststructure> gene=emtA taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:90111231

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945655

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0004006

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0C960

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6622

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13897

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945655

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003217

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3656

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Kraft, AR et al. (1998) Membrane-bound lytic endotransglycosylase in Escherichia coli. J. Bacteriol. 180 3441-7 PubMed
  6. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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