elaD:Gene Product(s)

From EcoliWiki
Jump to: navigation, search

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

ElaD

Synonyms

predicted enzyme[1], B2269[2][1], ElaD[2][1] , ECK2263, JW5840, b2269

Product description

predicted enzyme[2]; deubiquitinase[3]

Protease, capable of cleaving AMC-ubiquitin model substrate; physiological substrate unknown[4]

EC number (for enzymes)


edit table

<protect></protect>

Notes

Function

[back to top]


<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0006508

proteolysis

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003653

P

Seeded from EcoCyc (v14.0)

complete

GO:0008233

peptidase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0645

F

Seeded from EcoCyc (v14.0)

complete

GO:0008234

cysteine-type peptidase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003653

F

Seeded from EcoCyc (v14.0)

complete

GO:0008234

cysteine-type peptidase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0788

F

Seeded from EcoCyc (v14.0)

complete

edit table

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
edit table

</protect>

Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
edit table

<protect></protect>

Notes

Structure and Physical Properties

[back to top]


<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MMVTVVSNYC QLSQTQLSQT FAEKFTVTEE LLQSLKKTAL SGDEESIELL HNIALGYDKF
GKEAEDILYH IVRTPTNETL SIIRLIKNAC LKLYNLAHIA TNSPLKSHDS DDLLFKKLFS
PSKLMTIIGD EIPLISEKQS LSKVLLNDEN NELSDGTNFW DKNRQLTTDE IACYLQKIAA
NAKNTQVNYP TGLYVPYSTR THLEDALNEN IKSDPSWPNE VQLFPINTGG HWILVSLQKI
VNKKNNKLQI KCVIFNSLRA LGYDKENSLK RVINSFNSEL MGEMSNNNIK VHLNEPEIIF
LHADLQQYLS QSCGAFVCMA AQEVIEQRES NSDSAPYTLL KNHADRFKKY SAEEQYEIDF
QHRLANRNCY LDKYGDANIN HYYRNLEIKH SQPKNRASGK RVS
Length

403

Mol. Wt

46.079 kDa

pI

6.8 (calculated)

Extinction coefficient

41,830 - 42,705 (calc based on 17 Y, 3 W, and 7 C residues)

edit table


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

164..363

PF02902 Ulp1 protease family, C-terminal catalytic domain

PMID:19920124[5]

edit table

<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=elaD taxon=562,83333 </beststructure>

Models

View models at:

edit table
</protect>

Structure figures

<protect>

</protect>

Notes

Gene Product Resources

[back to top]


See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
edit table

<protect></protect>

Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16130204

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946742

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007499

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:Q47013

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7176

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG14261

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946742

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003752

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB4009

Escherichia coli str. K-12 substr. MG1655

edit table

<protect></protect>

Notes

Links

[back to top]




References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=elaD:Gene_Product(s)&oldid=1494152"