dmlR:Gene Product(s)
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
| Standard name |
DmlR |
|---|---|
| Synonyms |
predicted DNA-binding transcriptional regulator[1], B1799[2][1], YeaT[2][1] DmlR[3], DmlR, ECK1797, JW1788, yeaT, b1799 |
| Product description |
predicted DNA-binding transcriptional regulator[2][4] Positive transcriptional regulator for yeaU[5] |
| EC number (for enzymes) |
|
| edit table |
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Notes
Function
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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0003677 |
DNA binding |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0003700 |
transcription factor activity |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc (v14.0) |
complete | ||
| edit table |
Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
|
Protein |
rtcB |
Experiment(s):EBI-1140853 | ||
|
Protein |
rplF |
Experiment(s):EBI-1140853 | ||
|
Protein |
groL |
Experiment(s):EBI-1140853 | ||
|
Protein |
ftsZ |
Experiment(s):EBI-1140853 | ||
|
Protein |
ydeH |
Experiment(s):EBI-1140853 | ||
|
Protein |
recA |
Experiment(s):EBI-1140853 | ||
|
Protein |
mqo |
Experiment(s):EBI-1140853 | ||
|
Protein |
rplE |
Experiment(s):EBI-1140853 | ||
|
Protein |
glpK |
Experiment(s):EBI-1140853 | ||
|
Protein |
tusE |
Experiment(s):EBI-1140853 | ||
|
Protein |
rpsB |
Experiment(s):EBI-1140853 | ||
|
Protein |
rsuA |
Experiment(s):EBI-1140853 | ||
| edit table |
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Notes
Localization
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
| Compartment | Description | Evidence | Reference/Source | Notes |
|---|---|---|---|---|
| edit table |
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Notes
Structure and Physical Properties
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Physical Properties
See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Name | |
|---|---|
| Sequence |
MKHKTRIMNN LPLLNDLRVF MLVARRAGFA AVAEELGVSP AFVSKRIALL EQTLNVVLLH RTTRRVTITE EGERIYEWAQ RILQDVGQMM DELSDVRQVP QGMLRIISSF GFGRQVVAPA LLALAKAYPQ LELRFDVEDR LVDLVNEGVD LDIRIGDDIA PNLIARKLAT NYRILCASPE FIAQHGAPKH LTDLSALPCL VIKERDHPFG VWQLRNKEGP HAIKVTGPLS SNHGEIVHQW CLDGQGIALR SWWDVSENIA SGHLVQVLPE YYQPANVWAV YVSRLATSAK VRITVEFLRQ YFAEHYPNFS LEHA |
| Length |
314 |
| Mol. Wt |
35.525 kDa |
| pI |
7.4 (calculated) |
| Extinction coefficient |
44,920 - 45,295 (calc based on 8 Y, 6 W, and 3 C residues) |
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Domains/Motifs/Modification Sites
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See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
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<motif_map/> |
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Structure
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Structure figures<protect> | ||||||
Notes
Gene Product Resources
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
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Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
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Notes
Links
| Name | URL | Comments |
|---|---|---|
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ Lukas, H et al. (2010) Regulation of aerobic and anaerobic D-malate metabolism of Escherichia coli by the LysR-type regulator DmlR (YeaT). J. Bacteriol. 192 2503-11 PubMed
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ 6.00 6.01 6.02 6.03 6.04 6.05 6.06 6.07 6.08 6.09 6.10 6.11 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
- ↑ 7.0 7.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed
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