dcrB:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

DcrB

Synonyms

periplasmic protein[1], B3472[2][1], YhhR[2][1], DcrB[2][1] , ECK3456, JW5682, yhhR, b3472

Product description

conserved protein involved in bacteriophage adsorption[2][3]

Probable lipoprotein required for phage C1 adsorption; periplasmic; Cys conserved[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0042597

periplasmic space

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0574

C

Seeded from EcoCyc (v14.0)

complete

GO:0042597

periplasmic space

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0200

C

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

dps

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

ygfK

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

yfaY

PMID:19402753[5]

MALDI(Z-score):35.751368

Protein

ygaD

PMID:19402753[5]

MALDI(Z-score):19.339322

Protein

gltA

PMID:19402753[5]

MALDI(Z-score):30.006440

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

periplasm

From EcoCyc[3]


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MIRWMNEPLW PFIERKKSMR NLVKYVGIGL LVMGLAACDD KDTNATAQGS VAESNATGNP
VNLLDGKLSF SLPADMTDQS GKLGTQANNM HVWSDATGQK AVIVIMGDDP KEDLAVLAKR
LEDQQRSRDP QLQVVTNKAI ELKGHKMQQL DSIISAKGQT AYSSVILGNV GNQLLTMQIT
LPADDQQKAQ TTAENIINTL VIQ
Length

203

Mol. Wt

22.131 kDa

pI

5.8 (calculated)

Extinction coefficient

19,480 - 19,605 (calc based on 2 Y, 3 W, and 1 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

motif

1-19

UniProt Manual:Signal Peptides

UniProt:P0AEE1

Domain

49..182

PF08786 Domain of unknown function (DUF1795)

PMID:19920124[6]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=dcrB taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:90111595

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947983

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0011342

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0AEE1

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7767

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12218

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947983

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004304

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2132

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 5.4 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  6. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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