csrB:Gene Product(s)

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

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Standard name

CsrB RNA

Synonyms

regulatory sRNA[1]

Product description

CsrB RNA[2][3];

Component of CsrA complex with CsrB RNA[3]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
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Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of CsrA complex with CsrB RNA

could be indirect


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Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties

Type

sRNA

Sequence 
GAGUCAGACA ACGAAGUGAA CAUCAGGAUG AUGACACUUC UGCAGGACAC ACCAGGAUGG
UGUUUCAGGG AAAGGCUUCU GGAUGAAGCG AAGAGGAUGA CGCAGGACGC GUUAAAGGAC
ACCUCCAGGA UGGAGAAUGA GAACCGGUCA GGAUGAUUCG GUGGGUCAGG AAGGCCAGGG
ACACUUCAGG AUGAAGUAUC ACAUCGGGGU GGUGUGAGCA GGAAGCAAUA GUUCAGGAUG
AACGAUUGGC CGCAAGGCCA GAGGAAAAGU UGUCAAGGAU GAGCAGGGAG CAACAAAAGU
AGCUGGAAUG CUGCGAAACG AACCGGGAGC GCUGUGAAUA CAGUGCUCCC UUUUUUUAUU
Mol. Wt

117496.01

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Domains/Motifs/Modification Sites

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Type Residues Description Notes References
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Structure
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Structures

<beststructure> gene=csrB taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:G0-8785

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG31119

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002573

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB4282

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0047213

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

Categories

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