cspG:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

CspG

Synonyms

DNA-binding transcriptional regulator[1], B0990[2][1], CspG[2][1] , cspI, ECK0980, JW0974, b0990

Product description

cold shock protein CspG[2][3]

Cold shock protein homolog, cold-inducible[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0003676

nucleic acid binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011129

F

Seeded from EcoCyc (v14.0)

complete

GO:0003676

nucleic acid binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR012156

F

Seeded from EcoCyc (v14.0)

complete

GO:0003677

DNA binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002059

F

Seeded from EcoCyc (v14.0)

complete

GO:0003677

DNA binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0238

F

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0963

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0086

C

Seeded from EcoCyc (v14.0)

complete

GO:0006350

transcription

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0804

P

Seeded from EcoCyc (v14.0)

complete

GO:0006355

regulation of transcription, DNA-dependent

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002059

P

Seeded from EcoCyc (v14.0)

complete

GO:0006950

response to stress

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0346

P

Seeded from EcoCyc (v14.0)

complete

GO:0009409

response to cold

PMID:8631696[5]

IDA: Inferred from Direct Assay

P

Figure 3

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

amyA

PMID:15690043[6]

Experiment(s):EBI-883726

Protein

rplC

PMID:15690043[6]

Experiment(s):EBI-883726

Protein

rplL

PMID:15690043[6]

Experiment(s):EBI-883726

Protein

rplM

PMID:15690043[6]

Experiment(s):EBI-883726

Protein

rplV

PMID:15690043[6]

Experiment(s):EBI-883726

Protein

rpsB

PMID:15690043[6]

Experiment(s):EBI-883726

Protein

rpsE

PMID:15690043[6]

Experiment(s):EBI-883726

Protein

rplA

PMID:16606699[7]

Experiment(s):EBI-1138538

Protein

hchA

PMID:16606699[7]

Experiment(s):EBI-1138538

Protein

rpsD

PMID:16606699[7]

Experiment(s):EBI-1138538

Protein

rpsE

PMID:16606699[7]

Experiment(s):EBI-1138538

Protein

rplB

PMID:16606699[7]

Experiment(s):EBI-1138538

Protein

kdpB

PMID:16606699[7]

Experiment(s):EBI-1138538

Protein

rpsG

PMID:16606699[7]

Experiment(s):EBI-1138538

Protein

rpsI

PMID:16606699[7]

Experiment(s):EBI-1138538

Protein

rpsM

PMID:16606699[7]

Experiment(s):EBI-1138538

Protein

uspG

PMID:16606699[7]

Experiment(s):EBI-1138538

Protein

rpsC

PMID:16606699[7]

Experiment(s):EBI-1138538

Protein

rplD

PMID:16606699[7]

Experiment(s):EBI-1138538

Protein

amyA

PMID:19402753[8]

LCMS(ID Probability):99.0

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MSNKMTGLVK WFNADKGFGF ITPDDGSKDV FVHFTAIQSN EFRTLNENQK VEFSIEQGQR
GPAAANVVTL
Length

70

Mol. Wt

7.78 kDa

pI

5.9 (calculated)

Extinction coefficient

5,500 (calc based on 0 Y, 1 W, and 0 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

4..70

PF00313 'Cold-shock' DNA-binding domain

PMID:19920124[9]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=cspG taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16128956

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945591

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0003346

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0A978

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6511

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG14243

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945591

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003111

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3993

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Nakashima, K et al. (1996) A novel member of the cspA family of genes that is induced by cold shock in Escherichia coli. J. Bacteriol. 178 2994-7 PubMed
  6. ↑ 6.0 6.1 6.2 6.3 6.4 6.5 6.6 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
  7. ↑ 7.00 7.01 7.02 7.03 7.04 7.05 7.06 7.07 7.08 7.09 7.10 7.11 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  8. ↑ Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  9. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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