csiE:Gene Product(s)

From EcoliWiki
Jump to: navigation, search

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

CsiE

Synonyms

stationary phase inducible protein[1], B2535[2][1], CsiE[2][1] , csi-16, ECK2532, JW5878, b2535

Product description

stationary phase inducible protein[2][3]

Stationary phase inducible protein; sigma S-dependent promoter[4]

EC number (for enzymes)


edit table

<protect></protect>

Notes

Function

[back to top]


<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0006355

regulation of transcription, DNA-dependent

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011608

P

Seeded from EcoCyc (v14.0)

complete

edit table

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

glyS

PMID:19402753[5]

MALDI(Z-score):18.718541

Protein

rpsD

PMID:19402753[5]

MALDI(Z-score):28.385459

Protein

rpsC

PMID:19402753[5]

MALDI(Z-score):30.983649

Protein

rpsA

PMID:19402753[5]

MALDI(Z-score):20.443584

Protein

groS

PMID:19402753[5]

MALDI(Z-score):23.819878

Protein

tig

PMID:19402753[5]

MALDI(Z-score):25.250722

edit table

</protect>

Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
edit table

<protect></protect>

Notes

Structure and Physical Properties

[back to top]


<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MLMGDLQMMP TLAPPSVLSA PQRRCQILLT LFQPGLTATM ATFSELNGVD DDIASLDISE
TGREILRYHQ LTLTTGYDGS YRVEGTVLNQ RLCLFHWLRR GFRLCPSFIT SQFTPALKSE
LKRRGIARNF YDDTNLQALV NLCSRRLQKR FESRDIHFLC LYLQYCLLQH HAGITPQFNP
LQRRWAESCL EFQVAQEIGR HWQRRALQPV PPDEPLFMAL LFSMLRVPDP LRDAHQRDRQ
LRQSIKRLVN HFRELGNVRF YDEQGLCDQL YTHLAQALNR SLFAIGIDNT LPEEFARLYP
RLVRTTRAAL AGFESEYGVH LSDEESGLVA VIFGAWLMQE NDLHEKQIIL LTGNDSEREA
QIEQQLRELT LLPLNIKHMS VKAFLQTGAP RGAALIIAPY TMPLPLFSPP LIYTDLTLTT
HQQEQIRKML ESA
Length

433

Mol. Wt

49.831 kDa

pI

7.6 (calculated)

Extinction coefficient

39,880 - 40,880 (calc based on 12 Y, 4 W, and 8 C residues)

edit table


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

130..218

PF00874 PRD domain

PMID:19920124[6]

Domain

239..329

PF00874 PRD domain

PMID:19920124[6]

edit table

<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=csiE taxon=562,83333 </beststructure>

Models

View models at:

edit table
</protect>

Structure figures

<protect>

</protect>

Notes

Gene Product Resources

[back to top]


See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
edit table

<protect></protect>

Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:90111454

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947009

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0008346

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P54901

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7329

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13418

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947009

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003901

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3194

Escherichia coli str. K-12 substr. MG1655

edit table

<protect></protect>

Notes

Links

[back to top]




References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 5.4 5.5 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  6. ↑ 6.0 6.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=csiE:Gene_Product(s)&oldid=1494407"