csiD:Gene Product(s)

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YgaT

Synonyms

predicted protein[1], B2659[2][1], YgaT[2][1], CsiD[2][1] , csi-12, ECK2653, JW5427, ygaT, b2659

Product description

predicted protein[2][3]

Carbon starvation induced gene, function unknown; first gene in csiD-ygaF-gabDTP operon; tetrameric; structural homolog of 2-oxoglutarate Fe(II)-dependent oxygenases[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0005506

iron ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0408

F

Seeded from EcoCyc (v14.0)

complete

GO:0046872

metal ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0479

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MSLLCAFFRN VDIFRLWLRN EHRHVTLHLI RGSLLMNALT AVQNNAVDSG QDYSGFTLTP
SAQSPRLLEL TFTEQTTKQF LEQVAEWPVQ ALEYKSFLRF RVAKILDDLC ANQLQPLLLK
TLLNRAEGAL LINAVGVDDV KQADEMVKLA TAVAHLIGRS NFDAMSGQYY ARFVVKNVDN
SDSYLRQPHR VMELHNDGTY VEEITDYVLM MKIDEQNMQG GNSLLLHLDD WEHLDNYFRH
PLARRPMRFA APPSKNVSKD VFHPVFDVDQ QGRPVMRYID QFVQPKDFEE GVWLSELSDA
IETSKGILSV PVPVGKFLLI NNLFWLHGRD RFTPHPDLRR ELMRQRGYFA YASNHYQTHQ
Length

360

Mol. Wt

41.62 kDa

pI

6.8 (calculated)

Extinction coefficient

45,380 - 45,630 (calc based on 12 Y, 5 W, and 2 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

20..315

PF08943 CsiD

PMID:19920124[5]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=csiD taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:90111476

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948076

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0008754

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P76621

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7394

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13523

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948076

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003961

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3295

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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