chpR:Gene Product(s)
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
| Standard name |
ChpR |
|---|---|
| Synonyms |
antitoxin of the ChpA-ChpR toxin-antitoxin system[1], B2783[2][1], MazE[2][1], ChpR[2][1], ChpAI[2][1] , chpAI, chpR, ECK2777, JW2754, tasA, b2783 |
| Product description |
antitoxin of the MazEF "addiction module"[2]; MazE antitoxin of the MazF-MazE toxin-antitoxin system[3]; Component of MazE antitoxin of the MazF-MazE toxin-antitoxin system[3]; MazE-MazF complex[3] MazE antitoxin, toxin is MazF[4] |
| EC number (for enzymes) |
|
| edit table |
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Notes
Function
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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0003677 |
DNA binding |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc (v14.0) |
complete | ||
| edit table |
Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
|
Protein |
Subunits of MazE antitoxin of the MazF-MazE toxin-antitoxin system |
could be indirect |
||
|
Protein |
pepD |
Experiment(s):EBI-1143934 | ||
|
Protein |
rof |
Experiment(s):EBI-1143934 | ||
|
Protein |
dnaK |
Experiment(s):EBI-1143934 | ||
|
Protein |
dicC |
Experiment(s):EBI-1143934 | ||
|
Protein |
rpmB |
Experiment(s):EBI-1143934 | ||
|
Protein |
yaaX |
Experiment(s):EBI-1143934 | ||
|
Protein |
cnu |
Experiment(s):EBI-1143934 | ||
|
Protein |
rpsD |
Experiment(s):EBI-1143934 | ||
|
Protein |
glpK |
Experiment(s):EBI-1143934 | ||
|
Protein |
chaB |
Experiment(s):EBI-1143934 | ||
|
Protein |
Subunits of MazE-MazF complex |
could be indirect |
| |
| edit table |
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Notes
Localization
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| Compartment | Description | Evidence | Reference/Source | Notes |
|---|---|---|---|---|
| edit table |
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Notes
Structure and Physical Properties
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Physical Properties
See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Name | |
|---|---|
| Sequence |
MIHSSVKRWG NSPAVRIPAT LMQALNLNID DEVKIDLVDG KLIIEPVRKE PVFTLAELVN DITPENLHEN IDWGEPKDKE VW |
| Length |
82 |
| Mol. Wt |
9.355 kDa |
| pI |
4.5 (calculated) |
| Extinction coefficient |
16,500 (calc based on 0 Y, 3 W, and 0 C residues) |
| edit table |
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Domains/Motifs/Modification Sites
|
See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
|
<motif_map/> |
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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki. | </protect>
Structure figures<protect> | ||||||
Notes
Gene Product Resources
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
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Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
RegulonDB: |
Escherichia coli str. K-12 substr. MG1655 | |
|
EchoBASE: |
Escherichia coli str. K-12 substr. MG1655 | |
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Notes
Links
| Name | URL | Comments |
|---|---|---|
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See Help:Links_table for how to enter or edit information in this section of EcoliWiki.
References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ 5.0 5.1 5.2 5.3 5.4 5.5 5.6 5.7 5.8 5.9 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
- ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed
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