caiF:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

CaiF

Synonyms

DNA-binding transcriptional activator[1], B0034[2][1], CaiF[2][1] , ECK0035, JW0033, b0034

Product description

CaiF transcriptional activator[2][3]

Transcriptional activator of cai operon[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0006350

transcription

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0804

P

Seeded from EcoCyc (v14.0)

complete

GO:0016563

transcription activator activity

PMID:8631699[5]

EXP: Inferred from Experiment

F

Seeded from EcoCyc (v14.0)

complete

GO:0009437

carnitine metabolic process

PMID:8631699[5]

EXP: Inferred from Experiment

P

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

sdhA

PMID:16606699[6]

Experiment(s):EBI-1135382

Protein

tatE

PMID:16606699[6]

Experiment(s):EBI-1135382
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MKLHTIDIST ILIWPCLIAS KRVIARLLIC ETGVRMCEGY VEKPLYLLIA EWMMAENRWV
IAREISIHFD IEHSKAVNTL TYILSEVTEI SCEVKMIPNK LEGRGCQCQR LVKVVDIDEQ
IYARLRNNSR EKLVGVRKTP RIPAVPLTEL NREQKWQMML SKSMRR
Length

166

Mol. Wt

19.396 kDa

pI

9.2 (calculated)

Extinction coefficient

27,960 - 28,710 (calc based on 4 Y, 4 W, and 6 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

2..98

PF07180 Protein of unknown function (DUF1401)

PMID:19920124[7]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=caiF taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:90111079

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0000125

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0AE58

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6088

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13451

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:944795

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002708

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:944795

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3224

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 Eichler, K et al. (1996) Identification and characterization of the caiF gene encoding a potential transcriptional activator of carnitine metabolism in Escherichia coli. J. Bacteriol. 178 1248-57 PubMed
  6. ↑ 6.0 6.1 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  7. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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