arnB:Gene

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Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

arnB

Mnemonic

ara4N (4-amino-4-deoxy-L-arabinose)

Synonyms

yfbE, ECK2246, b2253, JW5372, pmrH[1][2], pgbP1, pmrH

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

50.95 minutes 

MG1655: 2363932..2365089
<gbrowseImage> name=NC_000913:2363932..2365089 source=MG1655 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 2249755..2250894
<gbrowseImage> name=NC_012759:2249755..2250894 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 2370580..2371737
<gbrowseImage> name=NC_007779:2370580..2371737 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 2454938..2456077
<gbrowseImage> name=NC_010473:2454938..2456077 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔarnB734::kan

PMID:16738554[3]

CGSC:106132


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes

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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

Plasmid clone

Shigen

PMID:16769691[4]

Status:

Primer 1:

Primer 2:

4B4

Kohara Phage

Genobase

PMID:3038334[5]

5H12

Kohara Phage

Genobase

PMID:3038334[5]

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:G7166

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG14089

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003742

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:947375

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3842

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007456

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
  4. Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  5. 5.0 5.1 Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed

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