agaA:Gene Product(s)
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
| Standard name |
AgaA |
|---|---|
| Synonyms |
predicted truncated N-acetylgalactosamine-6-phosphate deacetylase[1], B3135[2][1], YraA[2][1], AgaA[2][1] , ECK3123, JW5527, yraA, b3135 |
| Product description |
predicted truncated N-acetylgalactosamine-6-phosphate deacetylase[2][3] |
| EC number (for enzymes) |
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Notes
Function
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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0005975 |
carbohydrate metabolic process |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0016787 |
hydrolase activity |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0016787 |
hydrolase activity |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0003674 |
molecular function |
ISS: Inferred from Sequence or Structural Similarity |
|
F |
Non-functional protein As per discussion of PMID:8932697[4]: "Because the N-terminal truncation eliminates much of the region that is conserved in the NagA protein of E. coli and the putative NagA protein of Caen. elegans, it cannot be concluded that AgaA is functional for catalysis." PMID:12234664[5] Table 1, line 16 notes agaA is likely pseudogene. |
complete | ||
| GO:0008150 |
biological process |
ISS: Inferred from Sequence or Structural Similarity |
|
P |
Non-functional protein As per discussion of PMID:8932697[4]: "Because the N-terminal truncation eliminates much of the region that is conserved in the NagA protein of E. coli and the putative NagA protein of Caen. elegans, it cannot be concluded that AgaA is functional for catalysis." PMID:12234664[5] Table 1, line 16 notes agaA is likely pseudogene. |
complete | ||
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
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Notes
Localization
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| Compartment | Description | Evidence | Reference/Source | Notes |
|---|---|---|---|---|
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Notes
Structure and Physical Properties
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Physical Properties
See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Name | |
|---|---|
| Sequence |
MHCYNGMTGL HHREPGMVGA GLTDKRAWLE LIADGHHVHP AAMSLCCCCA KERIVLITDA MQAAGMPDGR YTLCGEEVQM HGGVVRTASG GLAGSTLSVD AAVRNMVELT GVTPAEAIHM ASLHPARMLG VDGVLGSLKP GKRASVVALD SGLHVQQIWI QGQLASF |
| Length |
167 |
| Mol. Wt |
17.518 kDa |
| pI |
7.0 (calculated) |
| Extinction coefficient |
13,980 - 14,730 (calc based on 2 Y, 2 W, and 6 C residues) |
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Domains/Motifs/Modification Sites
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Structure
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Structure figures<protect> | ||||||
Notes
Gene Product Resources
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
| Resource type | Source | Notes/Reference |
|---|---|---|
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Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
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Notes
Links
| Name | URL | Comments |
|---|---|---|
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 4.2 4.3 Reizer, J et al. (1996) Novel phosphotransferase genes revealed by bacterial genome sequencing: a gene cluster encoding a putative N-acetylgalactosamine metabolic pathway in Escherichia coli. Microbiology (Reading, Engl.) 142 ( Pt 2) 231-50 PubMed
- ↑ 5.0 5.1 5.2 5.3 Homma, K et al. (2002) A systematic investigation identifies a significant number of probable pseudogenes in the Escherichia coli genome. Gene 294 25-33 PubMed
- ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed
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