Tn3 tnpR:Gene Product(s)
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
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| Standard name |
Tn3 repressor |
|---|---|
| Synonyms |
TnpR |
| Product description | |
| EC number (for enzymes) |
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Notes
Function
Gene Ontology
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| Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0000337 |
regulation of transposition, DNA-mediated |
IDA: Inferred from Direct Assay |
P |
Figure 1 shows the recombination process using resolvase. |
complete | |||
| GO:0000337 |
regulation of transposition, DNA-mediated |
IMP: Inferred from Mutant Phenotype |
P |
Table 3 shows Mutant I producing the transposition product at a lower frequency than Mutant II. Mutant II is deficient in the repressor sequence of the gene and Mutant I is not. |
complete | |||
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Interactions
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| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
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Notes
Localization
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| Compartment | Description | Evidence | Reference/Source | Notes |
|---|---|---|---|---|
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Notes
Structure and Physical Properties
Physical Properties
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| Name | |
|---|---|
| Sequence |
MRIFGYARVS TSQQSLDIQI RALKDAGVKA NRIFTDKASG SSTDREGLDL LRMKVEEGDV ILVKKLDRLG RDTADMIQLI KEFDAQGVAV RFIDDGISTD GDMGQMVVTI LSAVAQAERR RILERTNEGR QEAKLKGIKF GRRRTVDRNV VLTLHQKGTG ATEIAHQLSI ARSTVYKILE DERAS |
| Length |
185 |
| Mol. Wt |
20.617 kDa |
| pI |
10.0 (calculated) |
| Extinction coefficient |
2,980 (calc based on 2 Y, 0 W, and 0 C residues) |
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Domains/Motifs/Modification Sites
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Structure<protect><protect> See Help:Product_structure for help entering or editing information in this section of EcoliWiki.
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Structure figures<protect> | |||
Notes
Gene Product Resources
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| Resource type | Source | Notes/Reference |
|---|---|---|
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Notes
Accessions in Other Databases
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See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
EcoCyc: |
Escherichia coli str. K-12 substr. MG1655 | |
|
EcoGene: |
Escherichia coli str. K-12 substr. MG1655 | |
|
RegulonDB: |
Escherichia coli str. K-12 substr. MG1655 | |
|
EchoBASE: |
Escherichia coli str. K-12 substr. MG1655 | |
|
ASAP: |
Escherichia coli str. K-12 substr. MG1655 | |
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Notes
Links
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| Name | URL | Comments |
|---|---|---|
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References
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- ↑ 1.0 1.1 Maekawa, T & Ohtsubo, E (1994) Identification of the region that determines the specificity of binding of the transposases encoded by Tn3 and gamma delta to the terminal inverted repeat sequences. Jpn. J. Genet. 69 269-85 PubMed
- ↑ Olorunniji, FJ & Stark, WM (2010) Catalysis of site-specific recombination by Tn3 resolvase. Biochem. Soc. Trans. 38 417-21 PubMed
- ↑ Sherratt, D et al. (1981) Transposon-specified, site-specific recombination systems. Cold Spring Harb. Symp. Quant. Biol. 45 Pt 1 275-81 PubMed
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