Plasmid F traB:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

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Standard name

traB

Synonyms

traB, Fpla080

Product description

traB

required for F pilus assembly; inner membrane protein

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0005515

protein binding

PMID:11722740[1]

IPI: Inferred from Physical Interaction

EcoliWiki:Plasmid_F_traK


F

complete

GO:0005887

integral to plasma membrane

PMID:11722740[1]

IDA: Inferred from Direct Assay

C

complete

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Interactions <protect> See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence 
MASINTIVKR KQYLWLGIVV VGTASAIGGA LYLSDVDMSG NGETVAEQEP VPDMTGVVDT
TFDDKVRQHA TTEMQVTAAQ MQKQYEEIRR ELDVLNKQRG DDQRRIEKLG QDNAALAEQV
KALGANPVTA TGEPVPQMPA SPPGPEGEPQ PGNTPVSFPP QGSVAVPPPT AFYPGNGVTP
PPQVTYQSVP VPNRIQRKVF TRNEGKQGPS LPYIPSGSFA KAMLIEGADA NASVTGNEST
VPMQLRITGL VEMPNSKTYD ATGCFVGLEA WGDVSSERAI VRTRNISCLK DGKTIDMPIK
GHVSFRGKNG IKGEVVMRNG KILGWAWGAG FVDGIGQGME RASQPAVGLG ATAAYGAGDV
LKMGIGGGAS KAAQTLSDYY IKRAEQYHPV IPIGAGNEVT VVFQDGFQLK TVEEMALERT
QSRAEEDNPE SPVPVPPSAE SHLNGFNTDQ MLKQLGNLNP QQFMSGSQGG GNDGK
Length

475

Mol. Wt

50.458 kDa

pI

5.2 (calculated)

Extinction coefficient

38,390 - 38,640 (calc based on 11 Y, 4 W, and 2 C residues)

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Domains/Motifs/Modification Sites

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Type Residues Description Notes References
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<motif_map/>

Structure
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Structures

<beststructure> gene=Plasmid_F_traB taxon=2465 </beststructure>

Models

View models at:

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</protect>

Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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Database Accession Notes

EcoCyc

EcoCyc:

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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  1. ↑ 1.0 1.1 Harris, RL et al. (2001) Evidence that F-plasmid proteins TraV, TraK and TraB assemble into an envelope-spanning structure in Escherichia coli. Mol. Microbiol. 42 757-66 PubMed

Categories

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