Phage T4 7:Gene Product(s)

From EcoliWiki
Jump to: navigation, search

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

<protect> See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

gp7 baseplate wedge initiator

Synonyms
Product description

C-terminus is predicted integral membrane domain

EC number (for enzymes)


edit table

</protect> <protect></protect>

Notes

Function

[back to top]


<protect> Gene Ontology <protect> See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0098015

virus tail, baseplate

PMID:4580679[1]

IGI: Inferred from Genetic Interaction

EcoliWiki:Phage_T4_23


C

Tails were isolated from a T4 mutant of gp23 (capsid protein).

complete

edit table

</protect>

Interactions <protect> See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
edit table

</protect> </protect>

Notes

Localization

<protect> See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
edit table

</protect> <protect></protect>

Notes

Structure and Physical Properties

[back to top]


<protect> Physical Properties <protect> See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence 
MTVKAPSVTS LRISKLSANQ VQVRWDDVGA NFYYFVEIAE TKTNSGENLP SNQYRWINLG
YTANNSFFFD DADPLTTYII RVATAAQDFE QSDWIYTEEF ETFATNAYTF QNMIEMQLAN
KFIQEKFTLN NSDYVNFNND TIMAALMNES FQFSPSYVDV SSISNFIIGE NEYHEIQGSI
QQVCKDINRV YLMESEGILY LFERYQPVVK VSNDKGQTWK AVKLFNDRVG YPLSKTVYYQ
SANTTYVLGY DKIFYGRKST DVRWSADDVR FSSQDITFAK LGDQLHLGFD VEIFATYATL
PANVYRIAEA ITCTDDYIYV VARDKVRYIK TSNALIDFDP LSPTYSERLF EPDTMTITGN
PKAVCYKMDS ICDKVFALII GEVETLNANP RTSKIIDSAD KGIYVLNHDE KTWKRVFGNT
EEERRRIQPG YANMSTDGKL VSLSSSNFKF LSDNVVNDPE TAAKYQLIGA VKYEFPREWL
ADKHYHMMAF IADETSDWET FTPQPMKYYA EPFFNWSKKS NTRCWINNSD RAVVVYADLK
YTKVIENIPE TSPDRLVHEY WDDGDCTIVM PNVKFTGFKK YASGMLFYKA SGEIISYYDF
NYRVRDTVEI IWKPTEVFLK AFLQNQEHET PWSPEEERGL ADPDLRPLIG TMMPDSYLLQ
DSNFEAFCEA YIQYLSDGYG TQYNNLRNLI RNQYPREEHA WEYLWSEIYK RNIYLNADKR
DAVARFFESR SYDFYSTKGI EASYKFLFKV LYNEEVEIEI ESGAGTEYDI IVQSDSLTED
LVGQTIYTAT GRCNVTYIER SYSNGKLQWT VTIHNLLGRL IAGQEVKAER LPSFEGEIIR
GVKGKDLLQN NIDYINRSRS YYVMKIKSNL PSSRWKSDVI RFVHPVGFGF IAITLLTMFI
NVGLTLKHTE TIINKYKNYK WDSGLPTEYA DRIAKLTPTG EIEHDSVTGE AIYEPGPMAG
VKYPLPDDYN AENNNSIFQG QLPSERRKLM SPLFDASGTT FAQFRDLVNK RLKDNIGNPR
DPENPTQVKI DE
Length

1,032

Mol. Wt

119.218 kDa

pI

4.9 (calculated)

Extinction coefficient

198,830 - 199,830 (calc based on 67 Y, 18 W, and 8 C residues)

edit table

</protect>

Domains/Motifs/Modification Sites

<protect> See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

882 - 904

Predicted membrane-spanning helix.

TMD predicted by TMHMM[2]


edit table

</protect>

<motif_map/>

tmhmm.php?gene=Phage_T4_7&show=pic&.jpg
Click the image to view raw output from TMHMM.

Structure
<protect> See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=Phage_T4_7 taxon=10665 </beststructure>

Models

View models at:

edit table

</protect>

</protect>

Structure figures

<protect>

</protect>

Notes

Gene Product Resources

[back to top]


<protect> See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
edit table

</protect> <protect></protect>

Notes

Accessions in Other Databases

[back to top]


<protect> See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
edit table

</protect> <protect></protect>

Notes

Links

[back to top]


<protect>

</protect>


References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ King, J & Laemmli, UK (1973) Bacteriophage T4 tail assembly: structural proteins and their genetic identification. J. Mol. Biol. 75 315-37 PubMed
  2. ↑ Krogh, A et al. (2001) Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J. Mol. Biol. 305 567-80 PubMed

Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=Phage_T4_7:Gene_Product(s)&oldid=1450383"