Phage P2 Y:Gene Product(s)
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
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| Standard name |
Y |
|---|---|
| Synonyms |
P2p08 |
| Product description |
gpY; experimental evidence, no additional details recorded; holin; essential for host cell cell lysis |
| EC number (for enzymes) |
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Notes
Function
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Gene Ontology
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| Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0044659 |
cytolysis by virus of host cell |
IMP: Inferred from Mutant Phenotype |
P |
Figure 2A,2B |
complete | |||
| GO:0034290 |
holin activity |
IMP: Inferred from Mutant Phenotype |
F |
Figure 5, text on page 4981 |
complete | |||
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Interactions
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| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
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Notes
Localization
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| Compartment | Description | Evidence | Reference/Source | Notes |
|---|---|---|---|---|
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Notes
Structure and Physical Properties
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Physical Properties
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See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Name | |
|---|---|
| Sequence |
MTAEEKSVLS LFMIGVLIVV GKVLAGGEPI TPRLFIGRML LGGFVSMVAG VVLVQFPDLS LPAVCGIGSM LGIAGYQVIE IAIQRRFKGR GKQ |
| Length |
93 |
| Mol. Wt |
9.817 kDa |
| pI |
10.2 (calculated) |
| Extinction coefficient |
1,490 - 1,615 (calc based on 1 Y, 0 W, and 1 C residues) |
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Domains/Motifs/Modification Sites
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See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
| Type | Residues | Description | Notes | References |
|---|---|---|---|---|
|
Domain |
10 - 27 |
Predicted membrane-spanning helix. |
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|
Domain |
34 - 56 |
Predicted membrane-spanning helix. |
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|
Domain |
61 - 83 |
Predicted membrane-spanning helix. |
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Structure
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Structure figures<protect> | ||||||
Notes
Gene Product Resources
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| Resource type | Source | Notes/Reference |
|---|---|---|
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Notes
Accessions in Other Databases
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See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
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Notes
Links
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| Name | URL | Comments |
|---|---|---|
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ To, KH et al. (2013) Functional analysis of a class I holin, P2 Y. J. Bacteriol. 195 1346-55 PubMed
- ↑ Ziermann, R et al. (1994) Functions involved in bacteriophage P2-induced host cell lysis and identification of a new tail gene. J. Bacteriol. 176 4974-84 PubMed
- ↑ 3.0 3.1 3.2 Krogh, A et al. (2001) Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J. Mol. Biol. 305 567-80 PubMed
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