Phage P2 Y:Gene Product(s)

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Gene

Gene Product(s)

Expression

Evolution

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Nomenclature

Function

Interactions

Localization

Sequence

Domains

Structure

Resources

Accessions

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References

Suggestions

Nomenclature

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Standard name	Y
Synonyms	P2p08
Product description	gpY; experimental evidence, no additional details recorded; holin; essential for host cell cell lysis
EC number (for enzymes)
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Function

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Gene Ontology <protect> See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
	GO:0044659	cytolysis by virus of host cell	PMID:23335412	IMP: Inferred from Mutant Phenotype		P	Figure 2A,2B	complete
	GO:0034290	holin activity	PMID:8051010	IMP: Inferred from Mutant Phenotype		F	Figure 5, text on page 4981	complete
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Interactions

See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	Notes	References	Evidence
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Localization

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Compartment	Description	Evidence	Reference/Source	Notes
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Structure and Physical Properties

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Physical Properties <protect> See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence	MTAEEKSVLS LFMIGVLIVV GKVLAGGEPI TPRLFIGRML LGGFVSMVAG VVLVQFPDLS LPAVCGIGSM LGIAGYQVIE IAIQRRFKGR GKQ
Length	93
Mol. Wt	9.817 kDa
pI	10.2 (calculated)
Extinction coefficient	1,490 - 1,615 (calc based on 1 Y, 0 W, and 1 C residues)
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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	Notes	References
Domain	10 - 27	Predicted membrane-spanning helix.	TMD predicted by TMHMM
Domain	34 - 56	Predicted membrane-spanning helix.	TMD predicted by TMHMM
Domain	61 - 83	Predicted membrane-spanning helix.	TMD predicted by TMHMM
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Structure See Help:Product_structure for help entering or editing information in this section of EcoliWiki. Structures <beststructure> gene=Phage_P2_Y taxon=10679 </beststructure> Models View models at: PSI-PRED Genomes TO Protein (GTOP) edit table

</protect> Structure figures Notes Gene Product Resources [back to top] See Help:Product_resources for help with entering or editing information in this section of EcoliWiki. Resource type Source Notes/Reference edit table Notes Accessions in Other Databases [back to top] See Help:Gene_accessions for help with entering information into the Gene Accessions table. Database Accession Notes edit table Notes Links [back to top] Name URL Comments edit table References [back to top] See Help:References for how to manage references in EcoliWiki. Categories [back to top]