Phage P1 lyz:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

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Standard name

Lyz

Synonyms

gp015

Product description

lysozyme; product 100 pct identical to previously identified gp17 protein of P1 in GenBank Accession Number CAA61013; region of aa 10-179 52 pct identical to putative phage lysosyme of Yersinia pestis (NP_405650, 170 aa); region of aa 35-179 48 pct identical to region of aa 40-184 of Haemophilus influenza phage HP1 (LYCV_BPHP1; 186 aa); similar to lysozymes of other phages;

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology <protect> See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0003796

lysozyme activity

PMID:6834479[1]

IMP: Inferred from Mutant Phenotype

F

Table 1, Text on page 1131 -1132

complete

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Interactions <protect> See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties <protect> See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence 
MKGKTAAGGG AICAIAVMIT IVMGNGNVRT NQAGLELIGN AEGCRRDPYM CPAGVWTDGI
GNTHGVTPGV RKTDQQIAAD WEKNILIAER CINQHFRGKD MPDNAFSAMT SAAFNMGCNS
LRTYYSKARG MRVETSIHKW AQKGEWVNMC NHLPDFVNSN GVPLRGLKIR REKERQLCLT
GLVNE
Length

185

Mol. Wt

20.255 kDa

pI

9.1 (calculated)

Extinction coefficient

26,470 - 27,345 (calc based on 3 Y, 4 W, and 7 C residues)

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Domains/Motifs/Modification Sites

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Type Residues Description Notes References

Domain

7 - 24

Predicted membrane-spanning helix.

TMD predicted by TMHMM[2]


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<motif_map/>

tmhmm.php?gene=Phage_P1_lyz&show=pic&.jpg
Click the image to view raw output from TMHMM.

Structure
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Structures

<beststructure> gene=Phage_P1_lyz taxon=10678 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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Database Accession Notes
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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Walker, JT & Walker, DH Jr (1983) Coliphage P1 morphogenesis: analysis of mutants by electron microscopy. J. Virol. 45 1118-39 PubMed
  2. ↑ Krogh, A et al. (2001) Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J. Mol. Biol. 305 567-80 PubMed

Categories

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