Phage P1 lydD:Gene Product(s)

From EcoliWiki
Jump to: navigation, search

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

<protect> See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

LydD

Synonyms

gp014

Product description

putative holin;

EC number (for enzymes)


edit table

</protect> <protect></protect>

Notes

Function

[back to top]


<protect> Gene Ontology <protect> See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0034290

holin activity

PMID:15489417[1]

ISM: Inferred from Sequence Model

F

Table 3, Text on 7062

Missing: with/from

edit table

</protect>

Interactions <protect> See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
edit table

</protect> </protect>

Notes

Localization

<protect> See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
edit table

</protect> <protect></protect>

Notes

Structure and Physical Properties

[back to top]


<protect> Physical Properties <protect> See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence 
MNKLRQLRRL STMKLSLAAI VFDSIFMAVY VLNETWPLEP LLYAGLRLCL TFLSMAARLM
QQKETASDCP RRAVRKYMAR RRRR
Length

84

Mol. Wt

9.937 kDa

pI

12.0 (calculated)

Extinction coefficient

9,970 - 10,220 (calc based on 3 Y, 1 W, and 2 C residues)

edit table

</protect>

Domains/Motifs/Modification Sites

<protect> See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

13 - 32

Predicted membrane-spanning helix.

TMD predicted by TMHMM[2]

Domain

42 - 59

Predicted membrane-spanning helix.

TMD predicted by TMHMM[2]


edit table

</protect>

<motif_map/>

tmhmm.php?gene=Phage_P1_lydD&show=pic&.jpg
Click the image to view raw output from TMHMM.

Structure
<protect> See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=Phage_P1_lydD taxon=10678 </beststructure>

Models

View models at:

edit table

</protect>

</protect>

Structure figures

<protect>

</protect>

Notes

Gene Product Resources

[back to top]


<protect> See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
edit table

</protect> <protect></protect>

Notes

Accessions in Other Databases

[back to top]


<protect> See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
edit table

</protect> <protect></protect>

Notes

Links

[back to top]


<protect>

</protect>


References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ Łobocka, MB et al. (2004) Genome of bacteriophage P1. J. Bacteriol. 186 7032-68 PubMed
  2. ↑ 2.0 2.1 Krogh, A et al. (2001) Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J. Mol. Biol. 305 567-80 PubMed

Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=Phage_P1_lydD:Gene_Product(s)&oldid=1491496"