Phage N15 54:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

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Standard name

gp53

Synonyms

N15p54 [1]

Product description

holin [1]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology <protect> See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions <protect> See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties <protect> See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence 
MRMNDHSGNI FTQLFAWLGT IAAALGFTTQ DMIYMFFGAV GLLISLASFI NGRIDARRRR
KEDEKRTAMI RAYLEEVSDK PIEERPTAVS VVADVLAKAG E
Length

101

Mol. Wt

11.283 kDa

pI

7.3 (calculated)

Extinction coefficient

8,480 (calc based on 2 Y, 1 W, and 0 C residues)

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Domains/Motifs/Modification Sites

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Type Residues Description Notes References

Domain

33 - 52

Predicted membrane-spanning helix.

TMD predicted by TMHMM[2]

Domain

7 - 29

Predicted membrane-spanning helix.

TMD predicted by TMHMM[2]


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<motif_map/>

tmhmm.php?gene=Phage_N15_54&show=pic&.jpg
Click the image to view raw output from TMHMM.

Structure
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Structures

<beststructure> gene=Phage_N15_54 taxon=40631 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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<protect> See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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<protect> See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 NCBI: Enterobacteria phage N15, complete genome http://www.ncbi.nlm.nih.gov/nuccore/NC_001901
  2. ↑ 2.0 2.1 Krogh, A et al. (2001) Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J. Mol. Biol. 305 567-80 PubMed

Categories

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